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asv benchmarks for imports and tools modules #184

Merged
merged 36 commits into from
Jul 24, 2023
Merged

asv benchmarks for imports and tools modules #184

merged 36 commits into from
Jul 24, 2023

Commits on Jun 22, 2023

  1. notebook w typical pipeline

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    sfmig committed Jun 22, 2023
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Commits on Jun 26, 2023

  1. notes on writing benchmarks

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    sfmig committed Jun 26, 2023
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  2. pipeline notebook

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    sfmig committed Jun 26, 2023
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  3. update gitignore

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    sfmig committed Jun 26, 2023
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  4. add imports benchmarks

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    sfmig committed Jun 26, 2023
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  5. basic benchmark for reading with dask

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    sfmig committed Jun 26, 2023
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  6. parametrise dask benchmark

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    sfmig committed Jun 26, 2023
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Commits on Jun 28, 2023

  1. add tiff benchmark and refactor

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    sfmig committed Jun 28, 2023
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  2. fix build command to use pyproject correctly

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    sfmig committed Jun 28, 2023
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Commits on Jun 29, 2023

  1. black formatting to IO benchmarks

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    sfmig committed Jun 29, 2023
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  2. prep benchmarks pending teardown

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    sfmig committed Jun 29, 2023
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  3. remove voxel_size from IO and refactor. change precommit config to sk… 

    …ip mypy errors in IO benchmarks
    @sfmig
    sfmig committed Jun 29, 2023
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  4. remove list comprehension

    @sfmig
    sfmig committed Jun 29, 2023
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  5. add benchmarks imports

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    sfmig committed Jun 29, 2023
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  6. remove initial templates

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    sfmig committed Jun 29, 2023
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  7. add init to benchmarks

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    sfmig committed Jun 29, 2023
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Commits on Jun 30, 2023

  1. add readme and comments to asv config

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    sfmig committed Jun 30, 2023
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  2. add teardown function to prep benchmarks

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    sfmig committed Jun 30, 2023
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  3. add comment for review

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    sfmig committed Jun 30, 2023
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  4. Merge branch 'main' into smg/basic-asv-benchmark

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    sfmig committed Jun 30, 2023
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  5. add cellfinder_core.tools.prep mypy fix

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    sfmig committed Jun 30, 2023
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  6. replace imlib by brainglobe_utils

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    sfmig committed Jun 30, 2023
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  7. small additions to readme

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    sfmig committed Jun 30, 2023
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  8. move cellfinder_core.tool.prep to ignore imports section

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    sfmig committed Jun 30, 2023
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  9. remove notebook

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    sfmig committed Jun 30, 2023
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  10. increase timeout

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    sfmig committed Jun 30, 2023
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Commits on Jul 20, 2023

  1. small additions and format edits to the readme

    @sfmig
    sfmig committed Jul 20, 2023
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  2. exclude benchmarks from manifest

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    sfmig committed Jul 20, 2023
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  3. small additions to the readme

    @sfmig
    sfmig committed Jul 20, 2023
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  4. reduce readme to basic commands

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    sfmig committed Jul 20, 2023
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Commits on Jul 21, 2023

  1. fixes to IO benchmarks from review discussions

    @sfmig
    sfmig committed Jul 21, 2023
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  2. fix typo

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    sfmig committed Jul 21, 2023
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  3. Apply Will's suggestions from code review 

    replace exclude by prune in manifest file

Co-authored-by: Will Graham <[email protected]>
    @sfmig @willGraham01
    sfmig and willGraham01 authored Jul 21, 2023
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  4. Merge branch 'smg/basic-asv-benchmark' of https://github.com/brainglo… 

    …be/cellfinder-core into smg/basic-asv-benchmark
    @sfmig
    sfmig committed Jul 21, 2023
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  5. change install path. remove TODOs. increase default timeout further

    @sfmig
    sfmig committed Jul 21, 2023
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  6. Merge branch 'main' into smg/basic-asv-benchmark

    @sfmig
    sfmig committed Jul 21, 2023
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