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naive attempt at fixing HDF5
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alessandrofelder committed Apr 29, 2024
1 parent cd1079a commit d76a81d
Showing 1 changed file with 13 additions and 6 deletions.
19 changes: 13 additions & 6 deletions .github/workflows/test_and_deploy.yml
Original file line number Diff line number Diff line change
Expand Up @@ -36,20 +36,27 @@ jobs:
# Run tests on ubuntu across all supported versions
python-version: ["3.9", "3.10"]
os: [ubuntu-latest]
# Include at least one MacOS and Windows test
# Include a Windows test and old/new Mac runs
include:
- os: macos-latest
python-version: "3.10"
- os: windows-latest
python-version: "3.10"
- os: macos-13
python-version: "3.10"
- os: macos-latest
python-version: "3.10"
- os: windows-latest
python-version: "3.10"
steps:
# Cache the tensorflow model so we don't have to remake it every time
- name: Cache tensorflow model
uses: actions/cache@v3
with:
path: "~/.cellfinder"
key: models-${{ hashFiles('~/.cellfinder/**') }}

# install additional Macos dependencies
- name: install HDF5 libraries
if: matrix.os == 'macos-latest'
run: |
brew install hdf5
export PATH="/usr/local/opt/hdf5/bin:$PATH"
# Run tests
- uses: neuroinformatics-unit/actions/test@v2
with:
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