bg-atlasapi -> brainglobe-atlasapi

brainglobe_utils/brainmapper/analysis.py

@@ -9,7 +9,7 @@
 
 import numpy as np
 import pandas as pd
-from bg_atlasapi import BrainGlobeAtlas
+from brainglobe_atlasapi import BrainGlobeAtlas
 
 from brainglobe_utils.general.system import ensure_directory_exists
 from brainglobe_utils.pandas.misc import safe_pandas_concat, sanitise_df

brainglobe_utils/brainreg/transform.py

@@ -6,7 +6,7 @@
 import numpy as np
 import pandas as pd
 import tifffile
-from bg_atlasapi import BrainGlobeAtlas
+from brainglobe_atlasapi import BrainGlobeAtlas
 
 from brainglobe_utils.image_io import get_size_image_from_file_paths
 

brainglobe_utils/citation/repositories.py

@@ -251,8 +251,8 @@ def unique_repositories_from_tools(
 
 # Static instances for each of our repositories
 # that we provide citation information for.
-bg_atlasapi = Repository(
-    "bg-atlasapi",
+brainglobe_atlasapi = Repository(
+    "brainglobe-atlasapi",
     [
         "BrainGlobe AtlasAPI",
         "AtlasAPI",

pyproject.toml

@@ -17,7 +17,7 @@ classifiers = [
     "Programming Language :: Python :: 3.11",
 ]
 dependencies = [
-    "bg-atlasapi",
+    "brainglobe-atlasapi >= 2.0.1",
     "brainglobe-space",
     "configobj",
     "natsort",

tests/tests/test_citation/test_cite.py

@@ -23,24 +23,24 @@ def test_citation_combinations(
 
     both_together = cite(
         "brainglobe-meta",
-        "bg-atlasapi",
+        "brainglobe-atlasapi",
         format=format,
         newline_separations=newline_separations,
     )
     bg_meta = cite("brainglobe-meta", format=format)
-    bg_atlasapi = cite("bg-atlasapi", format=format)
+    brainglobe_atlasapi = cite("brainglobe-atlasapi", format=format)
 
     # Fetching both citations together should mean the text from the
     # individual citations is included
-    assert bg_meta in both_together and bg_atlasapi in both_together, (
+    assert bg_meta in both_together and brainglobe_atlasapi in both_together, (
         "Fetching multiple tools at once"
         "does not generate all requested citations."
     )
     # Removing these individual blocks of text from the combined citation
     # should leave only newline and whitespace characters
     leftover_text = (
         both_together.replace(bg_meta, "")
-        .replace(bg_atlasapi, "")
+        .replace(brainglobe_atlasapi, "")
         .replace(" ", "")
         .replace("\n", "")
     )

tests/tests/test_citation/test_repositories.py

@@ -31,22 +31,22 @@ def test_repository_basics() -> None:
     - The less-than comparison (by repo name)
     """
     BrainGlobe = Repository("BrainGlobe", [])
-    bg_atlasapi = Repository("bg-atlasapi", [])
+    brainglobe_atlasapi = Repository("brainglobe-atlasapi", [])
 
     # URL construction
     assert BrainGlobe.url == "https://github.com/brainglobe/BrainGlobe"
 
     # Equality comparison
     assert (
-        BrainGlobe != bg_atlasapi
+        BrainGlobe != brainglobe_atlasapi
     ), "Different repositories are deemed equal!"
     assert (
         BrainGlobe == BrainGlobe
     ), "Identical repositories are deemed unequal!"
 
     # Less-than and ordering (alphabetical by Python)
     assert (
-        BrainGlobe < bg_atlasapi
+        BrainGlobe < brainglobe_atlasapi
     ), "Repository comparison does not assert alphabetical order by name"
 
 
@@ -77,7 +77,9 @@ def test_unique_repos() -> None:
     assert (
         len(
             unique_repositories_from_tools(
-                "bg-atlasapi", "bg_atlasapi", report_duplicates=True
+                "brainglobe-atlasapi",
+                "brainglobe_atlasapi",
+                report_duplicates=True,
             )
         )
         == 1