[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

brainglobe_utils/general/list.py

@@ -1,5 +1,6 @@
 from natsort import natsorted
 
+
 def remove_empty_string(str_list):
     """
     Removes any empty strings from a list of strings
@@ -13,6 +14,7 @@ def unique_elements_lists(list_in):
     """return the unique elements in a list"""
     return list(dict.fromkeys(list_in))
 
+
 def check_unique_list(in_list, natural_sort=True):
     """
     Checks if all the items in a list are unique or not

brainglobe_utils/general/system.py

@@ -12,8 +12,8 @@
 from slurmio import slurmio
 from tqdm import tqdm
 
-from brainglobe_utils.general.string import get_text_lines
 from brainglobe_utils.general.exceptions import CommandLineInputError
+from brainglobe_utils.general.string import get_text_lines
 
 # On Windows, max_workers must be less than or equal to 61
 # https://docs.python.org/3/library/concurrent.futures.html#processpoolexecutor
@@ -351,6 +351,7 @@ def delete_directory_contents(directory, progress=False):
         for f in files:
             os.remove(os.path.join(directory, f))
 
+
 def check_path_exists(file):
     """
     Returns True is a file exists, otherwise throws a FileNotFoundError

tests/tests/test_general/test_list.py

@@ -1,4 +1,5 @@
 from brainglobe_utils.general import list as list_tools
+
 a = [1, "a", 10, 30]
 b = [30, 10, "c", "d"]
 
@@ -7,7 +8,6 @@
 list_without_empty = ["test1", "test 2", " ", "test4"]
 
 
-
 def test_remove_empty_string():
     assert (
         list_tools.remove_empty_string(list_with_empty) == list_without_empty
@@ -19,11 +19,13 @@ def test_unique_elements_list():
     unique_list = [1, 2, "a", "b", "dog"]
     assert list_tools.unique_elements_lists(list_in) == unique_list
 
+
 def test_check_unique_list():
     a = [1, "a", 10, 30]
     assert (True, []) == list_tools.check_unique_list(a)
     repeating_list = [1, 2, 3, 3, "dog", "cat", "dog"]
     assert (False, [3, "dog"]) == list_tools.check_unique_list(repeating_list)
 
+
 def test_common_member():
-    assert (True, [10, 30]) == list_tools.common_member(a, b)
+    assert (True, [10, 30]) == list_tools.common_member(a, b)

tests/tests/test_general/test_system.py

@@ -8,8 +8,8 @@
 import pytest
 
 from brainglobe_utils.general import system
-from brainglobe_utils.general.string import get_text_lines
 from brainglobe_utils.general.exceptions import CommandLineInputError
+from brainglobe_utils.general.string import get_text_lines
 
 data_dir = Path("tests", "data")
 cubes_dir = data_dir / "cubes"
@@ -328,10 +328,12 @@ def test_delete_directory_contents(tmp_path):
     system.delete_directory_contents(delete_dir, progress=False)
     assert os.listdir(delete_dir) == []
 
+
 def write_file_single_size(directory, file_size):
     with open(os.path.join(directory, str(file_size)), "wb") as fout:
         fout.write(os.urandom(file_size))
 
+
 def test_check_path_exists(tmpdir):
     num = 10
     tmpdir = str(tmpdir)