tests

Support single z-stack tif file for input #271

	name: tests

	on:
	push:
	branches:
	- "main"
	tags:
	- "v**"
	pull_request:
	workflow_dispatch:

	jobs:
	linting:
	name: Check Linting
	runs-on: ubuntu-latest
	steps:
	- uses: neuroinformatics-unit/actions/lint@v2

	manifest:
	name: Check Manifest
	runs-on: ubuntu-latest
	steps:
	- uses: neuroinformatics-unit/actions/check_manifest@v2

	test:
	needs: [linting, manifest]
	name: ${{ matrix.os }} py${{ matrix.python-version }}
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	# Run all supported Python versions on linux
	python-version: ["3.9", "3.10", "3.11"]
	os: [ubuntu-latest]
	# Include one windows and macos run
	include:
	- os: macos-latest
	python-version: "3.11"
	- os: windows-latest
	python-version: "3.11"

	steps:
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	# these libraries enable testing on Qt on linux
	- uses: pyvista/setup-headless-display-action@v2
	with:
	qt: true
	# Run tests
	- uses: neuroinformatics-unit/actions/test@v2
	with:
	python-version: ${{ matrix.python-version }}
	secret-codecov-token: ${{ secrets.CODECOV_TOKEN }}

	build_sdist_wheels:
	name: Build source distribution
	needs: [test]
	if: github.event_name == 'push' && github.ref_type == 'tag'
	runs-on: ubuntu-latest
	steps:
	- uses: neuroinformatics-unit/actions/build_sdist_wheels@v2

	upload_all:
	name: Publish build distributions
	needs: [build_sdist_wheels]
	runs-on: ubuntu-latest
	steps:
	- uses: neuroinformatics-unit/actions/upload_pypi@v2
	with:
	secret-pypi-key: ${{ secrets.TWINE_API_KEY }}

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