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Updates benchmarks for new S3 bucket/versions #1636

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Updates benchmarks for new S3 bucket/versions #1636

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0bd6dee
inital commit
mike-ferguson Dec 11, 2024
83833d4
data packaging changes
mike-ferguson Dec 11, 2024
5bec98a
remove scripts
mike-ferguson Dec 11, 2024
b50cb51
Update s3.py for new S3 structure
KartikP Dec 16, 2024
89f2779
remove core
KartikP Dec 16, 2024
7637788
change underscore to hyphen
mike-ferguson Dec 16, 2024
e43a41a
added comments
KartikP Dec 16, 2024
44f3cf9
Merge branch 'data_s3_updates' of https://github.com/brain-score/visi…
mike-ferguson Dec 16, 2024
7d82504
Merge branch 'master' into data_s3_updates
KartikP Dec 17, 2024
1ba9e57
update lonnqvist202 data versions
mike-ferguson Dec 17, 2024
7516e89
Merge branch 'data_s3_updates' of https://github.com/brain-score/visi…
mike-ferguson Dec 17, 2024
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20 changes: 10 additions & 10 deletions brainscore_vision/data/baker2022/__init__.py
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Expand Up @@ -6,35 +6,35 @@
# normal distortion:
stimulus_set_registry['Baker2022_normal_distortion'] = lambda: load_stimulus_set_from_s3(
identifier='Baker2022_normal_distortion',
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1="17d4db7458a29a787d12bb29c34e91daef1872bf",
zip_sha1="2c726abaf081c8a9828269a559222f8c6eea0e4f",
csv_version_id="upenpJUf5t_sZpuqmQOkARfnDx1ITvi0",
zip_version_id="GO0K_jHqUMWVYcV2DoM4ka.HHv.KzrSf")
csv_version_id="null",
zip_version_id="null")

data_registry['Baker2022_normal_distortion'] = lambda: load_assembly_from_s3(
identifier='Baker2022_normal_distortion',
version_id="7HACUgvwlGp_mIWb62BFzh8JlMwtDxpo",
version_id="null",
sha1="46c79a48bf2dbd995a9305d8fbc03a134a852e17",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
cls=BehavioralAssembly,
stimulus_set_loader=lambda: load_stimulus_set('Baker2022_normal_distortion'),
)

# inverted distortion:
stimulus_set_registry['Baker2022_inverted_distortion'] = lambda: load_stimulus_set_from_s3(
identifier='Baker2022_inverted_distortion',
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1="91e452e4651024c2b382694edfcbc7bdc6c3189b",
zip_sha1="4740a096af994c2232350469c664e53796f17a05",
csv_version_id="yiKAKACwcvMygzX27DI3BSG5h599Eji_",
zip_version_id="ZAmZEaRp0S2txTdXjn3LBY_vcFXaALPr")
csv_version_id="null",
zip_version_id="null")

data_registry['Baker2022_inverted_distortion'] = lambda: load_assembly_from_s3(
identifier='Baker2022_inverted_distortion',
version_id="7MV4uklu3pL0I9LB2xlHWvlnOjG7Flbv",
version_id="null",
sha1="b76fb57b25a58ca68db78d188fd0a783e1dcaf73",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
cls=BehavioralAssembly,
stimulus_set_loader=lambda: load_stimulus_set('Baker2022_inverted_distortion'),
)
4 changes: 2 additions & 2 deletions brainscore_vision/data/baker2022/data_packaging/inverted_distortion_data_assembly.py
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Expand Up @@ -38,6 +38,6 @@
assembly.name = 'Baker2022_inverted_distortion'

# upload to S3
package_data_assembly('brainio_brainscore', assembly, assembly_identifier=assembly.name,
package_data_assembly('brainscore-storage/brainio_brainscore', assembly, assembly_identifier=assembly.name,
stimulus_set_identifier='Baker2022_inverted_distortion',
assembly_class_name="BehavioralAssembly", bucket_name="brainio-brainscore")
assembly_class_name="BehavioralAssembly", bucket_name="brainscore-storage/brainio_brainscore")
4 changes: 2 additions & 2 deletions brainscore_vision/data/baker2022/data_packaging/inverted_distortion_stimulus_set.py
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Expand Up @@ -77,5 +77,5 @@
stimuli.name = 'Baker2022_inverted_distortion'

# upload to S3
package_stimulus_set("brainio_brainscore", stimuli, stimulus_set_identifier=stimuli.name,
bucket_name="brainio-brainscore")
package_stimulus_set("brainscore-storage/brainio_brainscore", stimuli, stimulus_set_identifier=stimuli.name,
bucket_name="brainscore-storage/brainio_brainscore")
4 changes: 2 additions & 2 deletions brainscore_vision/data/baker2022/data_packaging/normal_distortion_data_assembly.py
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Expand Up @@ -41,6 +41,6 @@


# upload to S3
package_data_assembly('brainio_brainscore', assembly, assembly_identifier=assembly.name,
package_data_assembly('brainscore-storage/brainio_brainscore', assembly, assembly_identifier=assembly.name,
stimulus_set_identifier='Baker2022_normal_distortion',
assembly_class_name="BehavioralAssembly", bucket_name="brainio-brainscore")
assembly_class_name="BehavioralAssembly", bucket_name="brainscore-storage/brainio_brainscore")
4 changes: 2 additions & 2 deletions brainscore_vision/data/baker2022/data_packaging/normal_distortion_stimulus_set.py
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Expand Up @@ -90,5 +90,5 @@
stimuli.name = 'Baker2022_normal_distortion' # give the StimulusSet an identifier name

# upload to S3
package_stimulus_set("brainio_brainscore", stimuli, stimulus_set_identifier=stimuli.name,
bucket_name="brainio-brainscore")
package_stimulus_set("brainscore-storage/brainio_brainscore", stimuli, stimulus_set_identifier=stimuli.name,
bucket_name="brainscore-storage/brainio_brainscore")
6 changes: 3 additions & 3 deletions brainscore_vision/data/barbumayo2019/__init__.py
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Expand Up @@ -16,8 +16,8 @@
# stimulus set
stimulus_set_registry['BarbuMayo2019'] = lambda: load_stimulus_set_from_s3(
identifier="BarbuMayo2019",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1="e4d8888ccb6beca28636e6698e7beb130e278e12",
zip_sha1="1365eb2a7231516806127a7d2a908343a7ac9464",
csv_version_id="3H1nicJcmKZgqfPV.ouH5jZln3GlZ3Lr",
zip_version_id="sx9cN3NFBBnQCnUCa85ziyWJxTUaPJGf")
csv_version_id="null",
zip_version_id="null")
20 changes: 10 additions & 10 deletions brainscore_vision/data/bashivankar2019/__init__.py
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Expand Up @@ -16,18 +16,18 @@
# assemblies
data_registry['BashivanKar2019.naturalistic'] = lambda: load_assembly_from_s3(
identifier="dicarlo.BashivanKar2019.naturalistic",
version_id="jDlQnpuhORCtzITHfOFcJiogR7jg8ihJ",
version_id="null",
sha1="1ec2f32ef800f0c6e15879d883be1d55b51b8b67",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
cls=NeuronRecordingAssembly,
stimulus_set_loader=lambda: load_stimulus_set('BashivanKar2019.naturalistic'),
)

data_registry['BashivanKar2019.synthetic'] = lambda: load_assembly_from_s3(
identifier="dicarlo.BashivanKar2019.synthetic",
version_id="30CNHSBYS_HN5tEuM1aa5hDFlFKq6gbI",
version_id="null",
sha1="f687c8d26f8943dc379dbcbe94d3feb148400c6b",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
cls=NeuronRecordingAssembly,
stimulus_set_loader=lambda: load_stimulus_set('BashivanKar2019.synthetic'),
)
Expand All @@ -36,17 +36,17 @@
# naturalistic
stimulus_set_registry['BashivanKar2019.naturalistic'] = lambda: load_stimulus_set_from_s3(
identifier="BashivanKar2019.naturalistic",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1="48ef84282552b8796142ffe7d0d2c632f8ef061a",
zip_sha1="d7b71b431cf23d435395205f1e38036a9e10acca",
csv_version_id="oPBzXglOBfXhFIDiNYJ8veuPTGYRvThW",
zip_version_id="YaEhNEoCIMD.NCO6DN29U.BB.x.8_Qzl")
csv_version_id="null",
zip_version_id="null")

# synthetic
stimulus_set_registry['BashivanKar2019.synthetic'] = lambda: load_stimulus_set_from_s3(
identifier="BashivanKar2019.synthetic",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1="81da195e9b2a128b228fc4867e23ae6b21bd7abd",
zip_sha1="e2de33f25c5c19bcfb400055c1db399d553487e5",
csv_version_id="D6rXwY6tL76Dqb1MkNKxW_8j2DaSRT7M",
zip_version_id="LmHolJMPFb42uq9B8sOZui_LiWZdIpTA")
csv_version_id="null",
zip_version_id="null")
4 changes: 2 additions & 2 deletions brainscore_vision/data/bashivankar2019/data_packaging/synthetic.py
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Expand Up @@ -152,9 +152,9 @@ def main():
assert responses_synth_concat.shape ==(21360, 233, 1)
package_data_assembly(
responses_synth_concat,
assembly_identifier="dicarlo.BashivanKar2019.synthetic",
assembly_identifier=None,
stimulus_set_identifier=stimuli_synth.identifier,
bucket_name='brainio-dicarlo'
bucket_name='brainscore-storage/'
)


Expand Down
16 changes: 8 additions & 8 deletions brainscore_vision/data/bmd2024/__init__.py
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Expand Up @@ -7,62 +7,62 @@
identifier='BMD_2024_texture_1',
version_id='0WF1iCvgHZGDrCrkigGCfUy3iGTGS69M',
sha1='050cef2bd38fe0e0c6d55c9a4ba0b1c57550a072',
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
cls=BehavioralAssembly,
stimulus_set_loader=lambda: load_stimulus_set('BMD2024.texture_1'))

data_registry['BMD2024.texture_2'] = lambda: load_assembly_from_s3(
identifier='BMD_2024_texture_2',
version_id='Exn4klT3qUYC6aQIanUox7MSjgHLn.t_',
sha1='1f9f4ee938df509c0cbeaec7fdfe0f40997da331',
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
cls=BehavioralAssembly,
stimulus_set_loader=lambda: load_stimulus_set('BMD2024.texture_2'))

data_registry['BMD2024.dotted_1'] = lambda: load_assembly_from_s3(
identifier='BMD_2024_dotted_1',
version_id='tMtSvkgphUn_C9a1WtoAWHmcgrA9oH5o',
sha1='eb16feffe392087b4c40ef249850825f702e7911',
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
cls=BehavioralAssembly,
stimulus_set_loader=lambda: load_stimulus_set('BMD2024.dotted_1'))

data_registry['BMD2024.dotted_2'] = lambda: load_assembly_from_s3(
identifier='BMD_2024_dotted_2',
version_id='JF_vla60eynLMfgqCyjjkn_u8Bb.HQOV',
sha1='297833a094513b99ae434e581df09ac64cd6582f',
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
cls=BehavioralAssembly,
stimulus_set_loader=lambda: load_stimulus_set('BMD2024.dotted_2'))


stimulus_set_registry['BMD2024.texture_1'] = lambda: load_stimulus_set_from_s3(
identifier='BMD_2024_texture_1',
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1='395911b2933d675b98dda7bae422f11648d8e86d',
zip_sha1='cfde36c93dc9070ef5dfaa0a992c9d2420af3460',
csv_version_id='2815L7UhBfYYCyZ7MgNdPsOXXcRLT1YZ',
zip_version_id='EelSX0uvmm.B6LzTPtQgWbrauUmPHmjl')

stimulus_set_registry['BMD2024.texture_2'] = lambda: load_stimulus_set_from_s3(
identifier='BMD_2024_texture_2',
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1='98ff8e3a1ca6f632ebc2daa909804314bc1b7e31',
zip_sha1='31c9d8449b25da8ad3cb034eee04db9193027fcb',
csv_version_id='gFqcLlA6xcmv1rpUoADKNsgyNYSV.G6T',
zip_version_id='c6B88cKdrD7YmUA1BXJoUeCMmAUbFzZw')

stimulus_set_registry['BMD2024.dotted_1'] = lambda: load_stimulus_set_from_s3(
identifier='BMD_2024_dotted_1',
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1='de4214666237a0be39810ec4fefd6ec8d2a2e881',
zip_sha1='b4ab1355665b5bf3bf81b7aa6eccfd396c96bda2',
csv_version_id='8OuzqjMhNuFDu41iEjGPeNBz4I1kxlCV',
zip_version_id='ue19A9hVTDzTKaXkfnJCrKaes.JLTLtv')

stimulus_set_registry['BMD2024.dotted_2'] = lambda: load_stimulus_set_from_s3(
identifier='BMD_2024_dotted_2',
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1='4555daa5257dee10c6c6a5625d3bb2d94452e294',
zip_sha1='20337c1fac66ed0eec16410c6801cca830e6c20c',
csv_version_id='l4E.CZVizNrwprRZHIjHEppBQK8LpBHM',
Expand Down
2 changes: 1 addition & 1 deletion brainscore_vision/data/bmd2024/data_packaging/BMD_2024_data_assembly.py
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Expand Up @@ -86,6 +86,6 @@ def collect_BMD2024_behavioral_assembly(data_path,condition):
assembly_identifier=assembly.name,
stimulus_set_identifier=assembly.name,
assembly_class_name="BehavioralAssembly",
bucket_name="brainio-brainscore")
bucket_name="brainscore-storage/brainio_brainscore")

print(prints)
2 changes: 1 addition & 1 deletion brainscore_vision/data/bmd2024/data_packaging/BMD_2024_simulus_set.py
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Expand Up @@ -42,7 +42,7 @@ def collect_BMD_2024_stimulus_set(condition, stimuli_directory, meta_filepath):
prints = package_stimulus_set(catalog_name=None,
proto_stimulus_set=assembly,
stimulus_set_identifier=assembly.name,
bucket_name="brainio-brainscore")
bucket_name="brainscore-storage/brainio_brainscore")
print(prints)


10 changes: 5 additions & 5 deletions brainscore_vision/data/bracci2019/__init__.py
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Expand Up @@ -19,18 +19,18 @@
# Human Stimulus Set
stimulus_set_registry["Bracci2019"] = lambda: load_stimulus_set_from_s3(
identifier="Bracci2019",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1="05b1af9b8e6ed478ea49339e11b0024c2da8c35f",
zip_sha1="a79b249e758421f46ec781301cd4b498f64853ce",
csv_version_id="0B6H2003B.aOml25nlWsxSTkQib1ndZP",
zip_version_id="DCqvGpnGL7J0JbQ6T6uAax5M5jbe_O8Q",
csv_version_id="null",
zip_version_id="null",
)

# Human Data Assembly (brain)
data_registry["Bracci2019"] = lambda: load_assembly_from_s3(
identifier="Bracci2019",
version_id="0w_eqBDiwxlSkuqSGK0sqUz1YhsgvY3C",
version_id="null",
sha1="cbec165bb20f09d0527fddba7cfbf115a396a2f3",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
cls=NeuroidAssembly,
)
2 changes: 1 addition & 1 deletion brainscore_vision/data/bracci2019/data_packaging.py
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Expand Up @@ -210,7 +210,7 @@ def main():
data_assembly.name,
human_stimulus_set.name,
"NeuroidAssembly",
"brainio-brainscore",
"brainscore-storage/brainio-brainscore",
)

print(human_stimulus_meta)
Expand Down
10 changes: 5 additions & 5 deletions brainscore_vision/data/cadena2017/__init__.py
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Expand Up @@ -23,9 +23,9 @@
# assembly
data_registry['Cadena2017'] = lambda: reindex(load_assembly_from_s3(
identifier="tolias.Cadena2017",
version_id="94KHymrNxUzoF6q56DYWg6n0vCdkLUEU",
version_id="null",
sha1="69bcaaa9370dceb0027beaa06235ef418c3d7063",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
cls=NeuronRecordingAssembly,
stimulus_set_loader=lambda: load_stimulus_set('Cadena2017'),
))
Expand All @@ -45,8 +45,8 @@ def reindex(assembly: DataAssembly) -> DataAssembly: # make sure we have the ex
# stimulus set
stimulus_set_registry['Cadena2017'] = lambda: load_stimulus_set_from_s3(
identifier="Cadena2017",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1="f55b174cc4540e5612cfba5e695324328064b051",
zip_sha1="88cc2ce3ef5e197ffd1477144a2e6a68d424ef6c",
csv_version_id="sHOpsR5jhCIPA4EwpqAhH3fLQX4L3sxM",
zip_version_id="HJVbo4DimkTtP5uS5zxA1rzMTUE6qU1B")
csv_version_id="null",
zip_version_id="null")
10 changes: 5 additions & 5 deletions brainscore_vision/data/cichy2019/__init__.py
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Expand Up @@ -20,9 +20,9 @@
# assembly
data_registry['Cichy2019'] = lambda: load_assembly_from_s3(
identifier="aru.Cichy2019",
version_id="83yFgsx5rc6pgpra4UiMxDDvgaV6ytU8",
version_id="null",
sha1="701e63be62b642082d476244d0d91d510b3ff05d",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
cls=DataAssembly,
stimulus_set_loader=lambda: load_stimulus_set('Cichy2019'),
)
Expand All @@ -31,8 +31,8 @@
# stimulus set
stimulus_set_registry['Cichy2019'] = lambda: load_stimulus_set_from_s3(
identifier="Cichy2019",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1="281c4d9d0dd91a2916674638098fe94afb87d29a",
zip_sha1="d2166dd9c2720cb24bc520f5041e6830779c0240",
csv_version_id="NXC3IR_XZG9QuMtxL7QFtDIcmGJrMKz4",
zip_version_id="5lAaoRzViKRDRyqiTYXm2PB3ADaV2Szo")
csv_version_id="null",
zip_version_id="null")
16 changes: 8 additions & 8 deletions brainscore_vision/data/coggan2024_behavior/__init__.py
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Expand Up @@ -9,28 +9,28 @@
# stimulus set
stimulus_set_registry['Coggan2024_behavior'] = lambda: load_stimulus_set_from_s3(
identifier="tong.Coggan2024_behavior",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1="01c312c4c16f7acc5afddaafcf826e5af58b13e2",
zip_sha1="1c070b88fa45e9e69d58f95466cb6406a45a4873",
csv_version_id="oyBtiZLEnNnCOHGzH5e12uzO9FrQ.ja_",
zip_version_id="sgPkAllzqOgP6KZcuGenFdAecBmRYApo")
csv_version_id="null",
zip_version_id="null")

# fitting stimuli
stimulus_set_registry['Coggan2024_behavior_fitting'] = lambda: (
load_stimulus_set_from_s3(
identifier="tong.Coggan2024_behavior_fitting",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1="136e48992305ea78a4fb77e9dfc75dcf01e885d0",
zip_sha1="24e68f5ba2f8f2105daf706307642637118e7d36",
csv_version_id="wq1GTpsTqB9ODddVSWpd4HMOllY7Q08_",
zip_version_id="IU.vvRmzBBhxErneMgQHoB1OKaeyen17"))
csv_version_id="null",
zip_version_id="null"))

# behavioral data
data_registry['Coggan2024_behavior'] = lambda: load_assembly_from_s3(
identifier="tong.Coggan2024_behavior",
version_id="Xuov.DxZnqSD1.Ia.ZySbSu8IW7cFigT",
version_id="null",
sha1="c1ac4a268476c35bbe40081358667a03d3544631",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
cls=BehavioralAssembly,
stimulus_set_loader=lambda: load_stimulus_set('Coggan2024_behavior'),
)
4 changes: 2 additions & 2 deletions brainscore_vision/data/coggan2024_behavior/data_packaging.py
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Expand Up @@ -138,7 +138,7 @@
catalog_name=None,
proto_stimulus_set=stimuli,
stimulus_set_identifier=stimuli.name,
bucket_name="brainio-brainscore")
bucket_name="brainscore-storage/brainio-brainscore")
print(packaged_stimulus_metadata)


Expand All @@ -161,6 +161,6 @@
assembly_identifier=assembly.name,
stimulus_set_identifier=stimuli.name,
assembly_class_name="BehavioralAssembly",
bucket_name="brainio-brainscore",
bucket_name="brainscore-storage/brainio-brainscore",
catalog_identifier=None)
print(packaged_behavioral_metadata)
10 changes: 5 additions & 5 deletions brainscore_vision/data/coggan2024_fMRI/__init__.py
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Expand Up @@ -9,18 +9,18 @@
# stimulus set
stimulus_set_registry['Coggan2024_fMRI'] = lambda: load_stimulus_set_from_s3(
identifier="tong.Coggan2024_fMRI",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
csv_sha1="0089f5f8fd3f2de14de12ed736a0f88575f8e1ee",
zip_sha1="e26fdea4d866799526dea183f5bfb9792718822a",
csv_version_id="q0kxLCC8m6LSaLEQzB26sfyoKgJJwkAs",
zip_version_id="SZwyN4ZgEmpW22YlcbqIbL9c0QudlMAp")
csv_version_id="null",
zip_version_id="null")

# fMRI data
data_registry['Coggan2024_fMRI'] = lambda: load_assembly_from_s3(
identifier="tong.Coggan2024_fMRI",
version_id="6P898Mio3VBsFx_qbC9rJECMELNGRprH",
version_id="null",
sha1="da3adbca5247d0491d366f94e8431fb3e4e58db2",
bucket="brainio-brainscore",
bucket="brainscore-storage/brainio-brainscore",
cls=NeuroidAssembly,
stimulus_set_loader=lambda: load_stimulus_set('Coggan2024_fMRI'),
)
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