brain-score.org submission (user:461) | (public:False)

brainscore_vision/data/data_packaging/__init__.py

@@ -0,0 +1,26 @@
+
+from brainio.assemblies import NeuronRecordingAssembly
+from brainscore_vision import load_stimulus_set
+from brainscore_vision import stimulus_set_registry, data_registry
+from brainscore_vision.data_helpers.s3 import load_assembly_from_s3, load_stimulus_set_from_s3
+
+stimulus_set_registry["IAPS"] = lambda: load_stimulus_set_from_s3(
+    identifier="IAPS",
+    bucket="brainio-brainscore",
+    csv_version_id="I90msPTpsEbRGMSnO.Ll76KOjN1waJMX",
+    csv_sha1="2e6bcf4bffe5d710ce4c744c4dffdbdae256a333",
+    zip_version_id="jFh.VNtU39NNFMoyss1fmoRFe9OyNv7x",
+    zip_sha1="9450121d2ac447a3c370e0b2b2bc2a7d9157480b",
+    filename_prefix='stimulus_',
+)
+
+data_registry["IAPS"] = lambda: load_assembly_from_s3(
+    identifier="IAPS",
+    version_id="J2gDD7VTuZ7qNT.JBfwFL9Z3emgNnRP3",
+    sha1="9050b94675687b4267031bfa3ae09c70654203dd",
+    bucket="brainio-brainscore",
+    cls=NeuronRecordingAssembly,
+    stimulus_set_loader=lambda: load_stimulus_set('IAPS'),
+)
+
+

brainscore_vision/data/data_packaging/data_packaging.py

@@ -0,0 +1,20 @@
+
+from brainio.packaging import package_stimulus_set, package_data_assembly
+from brainscore_vision import load_dataset, load_stimulus_set
+
+def upload_stimulus_set_to_s3(stimuli):
+    return package_stimulus_set(catalog_name=None, proto_stimulus_set=stimuli,
+                                stimulus_set_identifier=stimuli.name, bucket_name="brainio-brainscore")
+
+def upload_assembly_to_s3(assembly):
+    return package_data_assembly(None, assembly, assembly_identifier=assembly.name,
+                                 stimulus_set_identifier=assembly.name,
+                                 assembly_class_name="NeuronRecordingAssembly",
+                                 bucket_name="brainio-brainscore")
+
+
+if __name__ == '__main__':
+    ss = load_stimulus_set('IAPS')
+    assembly = load_dataset('IAPS')
+
+

brainscore_vision/data/data_packaging/test.py

@@ -0,0 +1,25 @@
+
+import pytest
+
+from brainscore_vision import load_dataset, load_stimulus_set
+from brainscore_vision.benchmark_helpers import check_standard_format
+
+
+@pytest.mark.memory_intense
+@pytest.mark.private_access
+def test_assembly():
+    assembly = load_dataset('IAPS')
+    check_standard_format(assembly, nans_expected=True)
+    assert assembly.attrs['stimulus_set_identifier'] == 'IAPS'
+    assert set(assembly['region'].values) == {'IT'}
+    assert len(assembly['presentation']) == 30150
+    assert len(assembly['neuroid']) == 36
+    # assert len(set(assembly['background_id'].values)) == 121
+
+
+@pytest.mark.private_access
+def test_stimulus_set():
+    stimulus_set = load_stimulus_set('IAPS')
+    assert len(stimulus_set) == 10
+
+