Code

Multishell#97

Code

Open

bcmcpher wants to merge 19 commits intobrain-life:masterbrain-life/encode:masterfrom bcmcpher:multishellbcmcpher/encode:multishellCopy head branch name to clipboard

+791-86

Commits

Commits on Nov 11, 2020

• initial commit to new fork from old (?) brain-life repo. just comment note, pre changes

  

  Brent McPherson

  committed
  b105ecb

  Copy full SHA for b105ecb

Commits on Nov 13, 2020

• added multishell support / partial implementation of kutosis forward model

  

  Brent McPherson

  committed
  16babd7

  Copy full SHA for 16babd7

• added / modified files for new virtual lesion test

  

  bcmcpher

  committed
  9f498ef

  Copy full SHA for 9f498ef

Commits on Nov 14, 2020

• modified to look for modelKurtosis in fe and estimate the apparent kurtosis coefficient (akc); modifications for multishell data - bookmark, not for release

  

  bcmcpher

  committed
  0d0f89d

  Copy full SHA for 0d0f89d

• changes for passing multishell / kurtosis parameters, fixed .gitignore for *.m~ files

  

  bcmcpher

  committed
  310cae5

  Copy full SHA for 310cae5

• adjusted refs to shell so demeaning actully happens

  

  bcmcpher

  committed
  b10fe31

  Copy full SHA for b10fe31

Commits on Nov 16, 2020

• add current version of feBuildDictionary that will fit kurtosis model to LiFE forward model

  

  bcmcpher

  committed
  7555687

  Copy full SHA for 7555687

Commits on Nov 20, 2020

• build and write kurtosis dictionary in feBuildDictionaries, but use tensor model still - this is still locked on even when the kurtosis model isnt valid. Split one long print statement into 3 lines…

  Show description for 06fd3da
  

  bcmcpher

  committed
  06fd3da

  Copy full SHA for 06fd3da

Commits on Nov 30, 2020

• fix feGet(fe, dsigdemeaned) by transposing input to match what was apparently the original orientation of the data for linear indexing

  

  bcmcpher

  committed
  2ff8f77

  Copy full SHA for 2ff8f77

Commits on Dec 2, 2020

• fixed the problem of transposed imaging data during call to get demeaned data, updated comments to match / describe

  

  bcmcpher

  committed
  3a57b5e

  Copy full SHA for 3a57b5e

• commented out all lines related to bvec flips and kurtosis fit. All the functions need to be updated to correctly parse inputs for these options - but that has to happen when the options work in th…

  Show description for 5ca9042
  

  bcmcpher

  committed
  5ca9042

  Copy full SHA for 5ca9042

Commits on Dec 11, 2020

• added feGet/feSet options for getting offset from input files, modified feConnectomeInit to pass warnings if a mismatch in file orientations is detected

  

  bcmcpher

  committed
  5b6b18f

  Copy full SHA for 5b6b18f

Commits on Dec 13, 2020

• added flip correction as a fix if it detects one, streamlined storage of offset / header info

  

  bcmcpher

  committed
  41dc560

  Copy full SHA for 41dc560

Commits on Mar 11, 2021

• added checks to loading multishell info to fill in old single shell structures

  

  bcmcpher

  committed
  be97e7b

  Copy full SHA for be97e7b

Commits on Mar 12, 2021

• add an isdeployed check around mex fxns so they can be compiled

  

  bcmcpher

  committed
  0d1d222

  Copy full SHA for 0d1d222

Commits on Mar 29, 2021

• renamed fxn for sanity in debugging

  

  bcmcpher

  committed
  d9c5d94

  Copy full SHA for d9c5d94

Commits on Apr 2, 2021

• added function to convert 3d tensor to 2d matrix for optimization

  

  bcmcpher

  committed
  b2275da

  Copy full SHA for b2275da

• updated documentation

  

  bcmcpher

  committed
  aa44cb8

  Copy full SHA for aa44cb8

• preallocate and print useful updates in feSparseMatrixCoords

  

  Brent McPherson

  committed
  0a8af27

  Copy full SHA for 0a8af27