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Prefer dnf5 for fedora CI #2742

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wants to merge 217 commits into from
Closed

Prefer dnf5 for fedora CI #2742

wants to merge 217 commits into from

Commits on Feb 28, 2022

  1. Build containers in GHA CI

    @dschwoerer
    dschwoerer committed Feb 28, 2022
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Commits on Mar 9, 2022

  1. Improve docker CI 

    * support sudo without password
* set actually a password
* Use --build-args rather then bash script to generate Dockerfile
    @dschwoerer
    dschwoerer committed Mar 9, 2022
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  2. Only generate if file is executable

    @dschwoerer
    dschwoerer committed Mar 9, 2022
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  3. CI: Nicer name for builds

    @dschwoerer
    dschwoerer committed Mar 9, 2022
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Commits on Feb 7, 2023

  1. CI: Also build an image with utils installed

    @dschwoerer
    dschwoerer committed Feb 7, 2023
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Commits on Feb 8, 2023

  1. [skip ci] Apply black changes

    @dschwoerer @github-actions
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Commits on Feb 17, 2023

  1. make executable dir optional

    @dschwoerer
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  2. Fall back to using $PATH to find bout-squashoutput

    @dschwoerer
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  3. Error early with in-source-builds 

    * Previously the second cmake invocation failed, e.g. after some source
  changes or after changing a configure time option
* It also generated many files, some of which overwrite git-tracked files from
  autotools, and others where not git-ignored.
    @dschwoerer
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  4. Merge pull request #2659 from boutproject/squash-optional 

    Squash optional
    @bendudson
    bendudson authored Feb 17, 2023
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Commits on Feb 20, 2023

  1. Declare variable as unused to avoid warning

    @dschwoerer
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  2. Avoid no-return warning in pvode

    @dschwoerer
    dschwoerer committed Feb 20, 2023
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  3. Avoid PVEC_REAL_MPI_TYPE redifinition warning

    @dschwoerer
    dschwoerer committed Feb 20, 2023
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  4. Avoid iter not used warning

    @dschwoerer
    dschwoerer committed Feb 20, 2023
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  5. Apply clang-format changes

    @dschwoerer @github-actions
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  6. Allow in-source-builds, but recommend against

    @dschwoerer
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Commits on Feb 22, 2023

  1. Fix: highlight code

    @dschwoerer
    dschwoerer committed Feb 22, 2023
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  2. Fix: all boutpp members are imported

    @dschwoerer
    dschwoerer committed Feb 22, 2023
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  3. Fix more references that should be code

    @dschwoerer
    dschwoerer committed Feb 22, 2023
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  4. Fix: code needs to be separated by an empty line

    @dschwoerer
    dschwoerer committed Feb 22, 2023
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  5. RTD: Add more modules for mock

    @dschwoerer
    dschwoerer committed Feb 22, 2023
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  6. Fix some warnings in output header

    @ZedThree
    ZedThree committed Feb 22, 2023
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  7. Fix deprecated header includes

    @ZedThree
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  8. Merge pull request #2666 from boutproject/fix-bad-merge 

    Fix some warnings and deprecated headers
    @ZedThree
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  9. Merge branch 'master' into output-warning

    @ZedThree
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  10. Some fixes for tokamak-2fluid example 

    Not comprehensive, still fails to run successfully on basic input
file (zero pivot in cyclic reduce)

Fixes:

- unused variables
- wrong variable names (including case)
- creating laplacians from wrong input sections
- some issues with staggering
    @ZedThree
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  11. Apply clang-format changes

    @ZedThree @github-actions
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  12. Do not check for PVEC_REAL_MPI_TYPE change 

    MPI_DOUBLE is a macro, so this check can break, even if there is no mismatch.
    @dschwoerer
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Commits on Feb 23, 2023

  1. Fix versions after release

    @dschwoerer
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  2. Merge pull request #2669 from boutproject/master-version 

    Fix versions after release
    @ZedThree
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  3. Merge pull request #2664 from boutproject/master-docs-boutpp 

    Improve docs + fix boutpp docs (master)
    @ZedThree
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  4. Merge pull request #2661 from boutproject/output-warning 

    Fix some warnings
    @ZedThree
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Commits on Feb 24, 2023

  1. Fix typos 

    Co-authored-by: Peter Hill <[email protected]>
    @dschwoerer @ZedThree
    dschwoerer and ZedThree authored Feb 24, 2023
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Commits on Mar 14, 2023

  1. Explicitly cast to void*

    @dschwoerer
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  2. Update signature to match upstream

    @dschwoerer
    dschwoerer committed Mar 14, 2023
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  3. Apply clang-format changes

    @dschwoerer @github-actions
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  4. Merge branch 'master' into cast-sagitter

    @dschwoerer
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Commits on Mar 15, 2023

  1. Ensure to pass a pointer 

    `MPI_COMM_WORLD` can be int, thus pass the BOUT++ communicator

Co-authored-by: Peter Hill <[email protected]>
    @dschwoerer @ZedThree
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Commits on Mar 16, 2023

  1. MPI_Comm is a pointer type 

    Do not take the address of the pointer. Compiles with mpich and openmpi
    @dschwoerer
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  2. Return reference 

    This is needed so we can get a pointer to the communicator, as is needed
by SUNContext
    @dschwoerer
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  3. Pass pointer to to SUNContext 

    pass MPI_Comm* to SUNContext_Create as indicated in the docs
https://sundials.readthedocs.io/en/latest/sundials/SUNContext_link.html
    @dschwoerer
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  4. Merge pull request #2668 from boutproject/tokamak-2fluid-fixes 

    Some fixes for tokamak-2fluid example
    @bendudson
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  5. Merge pull request #2660 from boutproject/cmake-insource 

    Error early with in-source-builds
    @bendudson
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Commits on Mar 17, 2023

  1. Update bundled boututils and boutdata

    @dschwoerer
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  2. Add checking bundled libs to release schedule

    @dschwoerer
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  3. install natsort for CI

    @dschwoerer
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  4. Workaround for test-restart-io for recent boututils 

    boututils changed the default for datafile to netcdf4, which breaks reading
the y position of the FieldPerp slices.
    @dschwoerer
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  5. update boutdata to include fix for yindex_global

    @dschwoerer
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Commits on Mar 22, 2023

  1. CI: switch to openmpi for fedora GHA

    @dschwoerer
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  2. If we are on a tag, we should use that as version

    @dschwoerer
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  3. Merge pull request #2683 from boutproject/use-tag-version 

    Python: If we are on a tag, we should use that as version
    @ZedThree
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Commits on Mar 23, 2023

  1. Do not assign in if statement

    @dschwoerer
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  2. Fix type in printf format string

    @dschwoerer
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  3. Revert "Workaround for test-restart-io for recent boututils" 

    This reverts commit 73f5d4d.
    @dschwoerer
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  4. Fall back to pkgconfig for finding netcdf-cxx4 

    Backport of https://cgit.freebsd.org/ports/tree/science/bout++/files/patch-CMakeLists.txt
    @dschwoerer
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  5. cmake does not need {} for blocks

    @dschwoerer
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  6. Switch to updated boututils

    @dschwoerer
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  7. Recommend requirements.txt for dependencies

    @dschwoerer
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  8. Build html docs by default

    @dschwoerer
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  9. Do not ignore doxygen errors if explicitly requested

    @dschwoerer
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  10. Merge pull request #2689 from boutproject/manual-requirements 

    Recommend `requirements.txt` for dependencies
    @ZedThree
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  11. Do not recommend --user for pip 

    It does not work in venv, and is not needed otherwise anymore.
    @dschwoerer
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  12. Update docs to updated defaults

    @dschwoerer
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  13. Merge pull request #2682 from boutproject/fedora-ci-openmpi 

    CI: switch to openmpi for fedora GHA
    @ZedThree
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  14. Merge pull request #2684 from boutproject/pvode-warnings 

    Fix pvode warnings
    @ZedThree
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  15. Remove default arguments

    @dschwoerer
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  16. Apply clang-format changes

    @dschwoerer @github-actions
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  17. Merge branch 'master' into cast-sagitter

    @dschwoerer
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  18. Merge pull request #2685 from boutproject/netcdf4-test 

    Revert "Workaround for test-restart-io for recent boututils"
    @dschwoerer
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  19. Merge pull request #2679 from boutproject/issue2663 

    Update boututils and boutdata to working versions
    @dschwoerer
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  20. Merge pull request #2657 from boutproject/bundled-py 

    Update bundled boututils and boutdata
    @ZedThree
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Commits on Mar 29, 2023

  1. Do not fail if numbers are only almost equal

    @dschwoerer
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  2. Remove unused vsnprintf macro 

    We have switch to fmt a while ago
    @dschwoerer
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  3. Apply clang-format changes

    @dschwoerer @github-actions
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  4. Increase limit for isUniform

    @dschwoerer
    dschwoerer committed Mar 29, 2023
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  5. Improve error message in case field is not uniform

    @dschwoerer
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Commits on Apr 19, 2023

  1. CI: do not run on removed old ubuntu

    @dschwoerer
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  2. CI: move some runs to ubunutu-latest

    @dschwoerer
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  3. CI: Update paths for ubuntu 20.04

    @dschwoerer
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  4. CI: fix slepc path 

    Co-authored-by: Peter Hill <[email protected]>
    @dschwoerer @ZedThree
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  5. CI: fix petsc path

    @dschwoerer
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  6. CI: Drop coverage build OS down to ubuntu-20.04 

    Incompatible PETSc/SLEPc version

This seems to only be a problem for `configure` and so should disappear when we switch completely to CMake anyway
    @ZedThree
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  7. Merge pull request #2693 from boutproject/almost-equal 

    isUniform: Do not fail if numbers are only almost equal
    @ZedThree
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  8. Merge pull request #2690 from boutproject/manual-requirements 

    Docs for docs improvements
    @ZedThree
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  9. Merge pull request #2678 from boutproject/cast-sagitter 

    Fix SUNDIALS `Context` construction for MPICH
    @ZedThree
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  10. Link against PkgConfig's imported target for netCDF

    @ZedThree
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  11. Merge pull request #2695 from boutproject/ci-fix-master 

    CI: do not run on removed old ubuntu
    @ZedThree
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Commits on Apr 20, 2023

  1. CMake: Fix setting CONFIG_LDFLAGS for netCDF from PkgConfig

    @ZedThree
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  2. Merge pull request #2686 from boutproject/cmake-netcdf-pkgconfig 

    Fall back to pkgconfig for finding netcdf-cxx4
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Commits on Apr 21, 2023

  1. Docs: Fix default branch for "suggest edit" 

    Fixes #2688

[skip ci]
    @ZedThree
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  2. Docs: Update copyright year 

    [skip ci]
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Commits on Apr 26, 2023

  1. Merge pull request #2697 from boutproject/docs-fix-default-branch 

    Docs: Fix default branch for "suggest edit"
    @ZedThree
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  2. Remove last uses of bout::globals::dump 

    Fixes #2667
    @ZedThree
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  3. Apply clang-format changes

    @ZedThree @github-actions
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Commits on Apr 27, 2023

  1. paralleltransform is a section

    @dschwoerer
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Commits on Apr 28, 2023

  1. CI: Add testing with new PETSc

    @dschwoerer @ZedThree
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  2. Call PCGAMGSetSymGraph only with old PETSc 

    For newer PETSc set the option on the matrix
    @dschwoerer @ZedThree
    dschwoerer authored and ZedThree committed Apr 28, 2023
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  3. Do not specify that the matrix is symmetric

    @dschwoerer @ZedThree
    dschwoerer authored and ZedThree committed Apr 28, 2023
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  4. CI: Specify that it uses cmake

    @dschwoerer @ZedThree
    dschwoerer authored and ZedThree committed Apr 28, 2023
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  5. CI: Fix path for checking installation

    @dschwoerer @ZedThree
    dschwoerer authored and ZedThree committed Apr 28, 2023
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  6. PETSC_DEFAULT is enum, and cannot be used as Options type

    @dschwoerer @ZedThree
    dschwoerer authored and ZedThree committed Apr 28, 2023
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  7. Make sure PETSC_DEFAULT is int when using it in Options

    @ZedThree
    ZedThree committed Apr 28, 2023
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  8. Replace deprecated PETSC_NULL with nullptr

    @ZedThree
    ZedThree committed Apr 28, 2023
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  9. Replace calls to PETSc printf functions with Output

    @ZedThree
    ZedThree committed Apr 28, 2023
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  10. Use default inner preconditioner for laplace-petsc3d test 

    PETSc changed the default in 3.17 to PCJACOBI. There doesn't appear to
be a programmatic way of setting this
    @ZedThree
    ZedThree committed Apr 28, 2023
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  11. Include failure reason for PETSc solvers

    @ZedThree
    ZedThree committed Apr 28, 2023
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  12. Use references instead of pointers in setting Options

    @ZedThree
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  13. Fix unit test for recent changes in PETSc 

    Need to set old smoother and increase KSP max iterations to regain old tolerance
    @ZedThree
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  14. Apply clang-format changes

    @ZedThree @github-actions
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  15. CI: Build latest SLEPc with latest PETSc

    @ZedThree
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  16. Clang-tidy fixes

    @ZedThree
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  17. CI: Unset SLEPC variables before building slepc

    @ZedThree
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  18. CI: Set SLEPC vars when building slepc

    @ZedThree
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Commits on May 2, 2023

  1. Update make dist invocation

    @dschwoerer
    dschwoerer authored May 2, 2023
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  2. Add doc strings

    @dschwoerer
    dschwoerer committed May 2, 2023
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  3. Allow to override version

    @dschwoerer
    dschwoerer committed May 2, 2023
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  4. Add help

    @dschwoerer
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  5. Add dist mode

    @dschwoerer
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  6. ignore dist files

    @dschwoerer
    dschwoerer committed May 2, 2023
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  7. Prefix next version with v

    @dschwoerer
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  8. Use boutpp backend for dist generation

    @dschwoerer
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  9. Merge pull request #2704 from boutproject/petsc-3-19 

    Add support for PETSc & SLEPc 3.18 / 3.19
    @ZedThree
    ZedThree authored May 2, 2023
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  10. Merge pull request #2699 from boutproject/fix-globals-dump 

    Remove last uses of `bout::globals::dump`
    @ZedThree
    ZedThree authored May 2, 2023
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Commits on May 3, 2023

  1. Merge remote-tracking branch 'origin/master'

    @dschwoerer
    dschwoerer committed May 3, 2023
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  2. Do not run PETSc and SLEPc in cmake step 

    PETSc result is anyway ignored, so that only speed ups the cmake step.
SLEPc can probably fail for similar reasons, so lets skip
    @dschwoerer
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  3. remove more unused code

    @dschwoerer
    dschwoerer committed May 3, 2023
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  4. Fix findPetsc.cmake

    @dschwoerer
    dschwoerer committed May 3, 2023
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  5. The additional check is not needed 

    The parallel transform already checks whether it is needed.

For the identity transform this is always needed, so the second check is
harmful in that case, and otherwise not needed.
    @dschwoerer
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  6. Apply clang-format changes

    @dschwoerer @github-actions
    dschwoerer authored and github-actions[bot] committed May 3, 2023
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Commits on May 4, 2023

  1. Merge pull request #2711 from boutproject/transform-no-extra-master 

    Remove unnecessary check for aligned fields when applying twist-shift
    @ZedThree
    ZedThree authored May 4, 2023
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Commits on May 16, 2023

  1. Merge branch 'next' of github.com:boutproject/BOUT-dev into docker-ci

    @dschwoerer
    dschwoerer committed May 16, 2023
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Commits on May 20, 2023

  1. Get mesh outputs after physics init 

    Physics models often modify metric tensor components during
initialisation (e.g. normalisation), so get their values
for saving to output only after init has been called.
    @bendudson
    bendudson committed May 20, 2023
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Commits on May 23, 2023

  1. Switch to github container registry

    @dschwoerer
    dschwoerer committed May 23, 2023
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  2. Fix docker.yml

    @dschwoerer
    dschwoerer committed May 23, 2023
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  3. Use commit for building

    @dschwoerer
    dschwoerer committed May 23, 2023
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  4. Use actual URL

    @dschwoerer
    dschwoerer committed May 23, 2023
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  5. CI: fix tag

    @dschwoerer
    dschwoerer committed May 23, 2023
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  6. Merge pull request #2714 from boutproject/mesh-outputvars 

    Get mesh outputs after physics init
    @bendudson
    bendudson authored May 23, 2023
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  7. CI: simplify git submodule update

    @dschwoerer
    dschwoerer authored May 23, 2023
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Commits on May 25, 2023

  1. beuler: Fix stencils, pre-allocation and hypre defaults 

    No mallocs now needed when setting matrix elements in serial or
parallel for 1D-recycling example.

Hypre preconditioner type can now be set with pc_hypre_type option.
Defaults to pilut, as this seems to give the best performance in
parallel.
    @bendudson
    bendudson committed May 25, 2023
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  2. cvode solver: Add linear and nonlinear convergence options 

    cvode_nonlinear_convergence_coef
    Sets parameter through call to CVodeSetNonlinConvCoef
    https://sundials.readthedocs.io/en/latest/cvodes/Usage/SIM.html#c.CVodeSetNonlinConvCoef

cvode_linear_convergence_coef
    Sets parameter through call to CVodeSetEpsLin
    https://sundials.readthedocs.io/en/latest/cvodes/Usage/SIM.html#c.CVodeSetEpsLin
    @bendudson
    bendudson committed May 25, 2023
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  3. Solver documentation 

    Add some documentation of new cvode and beuler solver options.
    @bendudson
    bendudson committed May 25, 2023
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  4. Apply clang-format changes

    @bendudson @github-actions
    bendudson authored and github-actions[bot] committed May 25, 2023
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  5. snes solver: Check if PETSc has Hypre 

    If PETSc is not configured with Hypre then PCHYPRESetType is
not defined.
    @bendudson
    bendudson committed May 25, 2023
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  6. beuler: Recalculate Jacobian on solver failure 

    If a step fails, re-calculate the Jacobian and preconditioner.
This can be an expensive operation, so doing this on failure
allows lag_jacobian to be increased.
    @bendudson
    bendudson committed May 25, 2023
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  7. Set PETSc options before initialize 

    Enables `petsc:log_view=true` option to set the PETSc `-log_view`
switch correctly.
    @bendudson
    bendudson committed May 25, 2023
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Commits on May 30, 2023

  1. Remove _TEST_ variables 

    They are not used anyway
    @dschwoerer
    dschwoerer committed May 30, 2023
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  2. Remove unchecked petsc_test_runs

    @dschwoerer
    dschwoerer committed May 30, 2023
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Commits on Jun 5, 2023

  1. Ensure we can compile PETSc 

    Reverts some of the deling commits and changes _runs to _compiles
    @dschwoerer
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Commits on Jun 8, 2023

  1. Use AUTO rather than MAYBE for finding python

    @dschwoerer
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  2. Use AUTO for LAPACK 

    Do not fail if lapack is not found, but use it if it is there
    @dschwoerer
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  3. ENV setup is done in base image

    @dschwoerer
    dschwoerer committed Jun 8, 2023
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Commits on Jun 13, 2023

  1. Update src/solver/impls/snes/snes.cxx 

    Co-authored-by: David Bold <[email protected]>
    @bendudson @dschwoerer
    bendudson and dschwoerer authored Jun 13, 2023
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  2. Update src/solver/impls/snes/snes.cxx 

    Co-authored-by: David Bold <[email protected]>
    @bendudson @dschwoerer
    bendudson and dschwoerer authored Jun 13, 2023
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  3. Update src/solver/impls/snes/snes.cxx 

    Co-authored-by: David Bold <[email protected]>
    @bendudson @dschwoerer
    bendudson and dschwoerer authored Jun 13, 2023
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  4. Merge pull request #2716 from boutproject/solver-improvements 

    Solver improvements
    @bendudson
    bendudson authored Jun 13, 2023
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Commits on Jun 14, 2023

  1. Merge pull request #2709 from boutproject/slepc-cmake 

    Do not try to run SLEPc or PETSc in configure
    @bendudson
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  2. Merge branch 'master' into dist-via-boutpp 

    * master:
  Update src/solver/impls/snes/snes.cxx
  Update src/solver/impls/snes/snes.cxx
  Update src/solver/impls/snes/snes.cxx
  Ensure we can compile PETSc
  Remove unchecked petsc_test_runs
  Remove _TEST_ variables
  Set PETSc options before initialize
  beuler: Recalculate Jacobian on solver failure
  snes solver: Check if PETSc has Hypre
  Apply clang-format changes
  Solver documentation
  cvode solver: Add linear and nonlinear convergence options
  beuler: Fix stencils, pre-allocation and hypre defaults
  Get mesh outputs after physics init
  Apply clang-format changes
  The additional check is not needed
  Fix findPetsc.cmake
  remove more unused code
  Do not run PETSc and SLEPc in cmake step
    @ZedThree
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  3. Merge pull request #2707 from boutproject/dschwoerer-make-dist 

    Update `make dist` invocation

[skip ci]
    @ZedThree
    ZedThree authored Jun 14, 2023
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  4. Merge pull request #2702 from boutproject/dschwoerer-patch-1 

    mesh:paralleltransform is a section

[skip ci]
    @ZedThree
    ZedThree authored Jun 14, 2023
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  5. CI: Bump version of clang-tidy-review

    @ZedThree
    ZedThree committed Jun 14, 2023
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  6. CI: Disable incredibly annoying cognitive complexity check

    @ZedThree
    ZedThree committed Jun 14, 2023
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  7. Merge branch 'next' into v5.1.0-rc 

    * next: (96 commits)
  Use petsc version 3.19.1 in examples, on 'Advanced installation options' page of manual. [skip ci]
  Apply clang-format changes
  The additional check is not needed
  provide VectorMetric in vectormetric.hxx
  Update more example code snippets from make to cmake. Include -S and -B flags, so examples are more consistent. Use <build-directory> to indicate the path to the build directory. [skip ci]
  Use petsc version 3.17.5 in examples, on 'Advanced installation options' page of manual. (version 3.19 is not compatible) [skip ci]
  Apply clang-format changes
  Pull out cached variables to function
  Mark some functions as const
  CI: Drop coverage build OS down to ubuntu-20.04
  CI: fix petsc path
  CI: fix slepc path
  CI: Update paths for ubuntu 20.04
  CI: move some runs to ubunutu-latest
  CI: do not run on removed old ubuntu
  Change command example from 'make' to 'cmake --build <build-directory>' in 'Compiling BOUT++' section of 'Advanced installation options' page of manual.
  Clarify example using dnf.
  Added comma, for clarity.
  Add /manual/sphinx/_build to gitignore file.
  Update examples to petsc version 3.19.0 in 'Advanced installation options' page of manual.
  ...
    @ZedThree
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  8. use contextlib.suppress to ignore KeyError 

    Co-authored-by: Peter Hill <[email protected]>
    @dschwoerer @ZedThree
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  9. Do not set -march=native as the compiled code is cached and runs on d… 

    …ifferent CPUs
    @dschwoerer
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  10. add missing import

    @dschwoerer
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Commits on Jun 15, 2023

  1. Fix FV::Div_a_Grad_perp Y alignment 

    Raises exception that Y alignment is incorrect when calling
fromFieldAligned. Need to set aligned when constructing field.
    @bendudson
    bendudson committed Jun 15, 2023
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  2. boutdata requires natsort 

    In CI install natsort package
    @bendudson
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  3. CI: Fix cmake flags

    @dschwoerer
    dschwoerer committed Jun 15, 2023
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  4. User setup has been moved to base image

    @dschwoerer
    dschwoerer committed Jun 15, 2023
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  5. Merge remote-tracking branch 'origin/v5.1.0-rc' into docker-ci

    @dschwoerer
    dschwoerer committed Jun 15, 2023
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  6. Apply clang-format changes

    @dschwoerer @github-actions
    dschwoerer authored and github-actions[bot] committed Jun 15, 2023
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  7. Fix default value for BOUT_ENABLE_PYTHON

    @dschwoerer
    dschwoerer committed Jun 15, 2023
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  8. cmake: Ensure libraries are prefixed with -l

    @dschwoerer
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  9. Merge pull request #2723 from boutproject/ci-install-natsort 

    CI install natsort
    @bendudson
    bendudson authored Jun 15, 2023
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Commits on Jun 16, 2023

  1. CI: Fix disabling checks

    @dschwoerer
    dschwoerer committed Jun 16, 2023
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  2. Merge branch 'v5.1.0-rc' into ci-fix-static

    @dschwoerer
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  3. Revert "Workaround for finding SUNDIALS" 

    This reverts commit 7d98f8e.
    @dschwoerer
    dschwoerer committed Jun 16, 2023
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  4. Merge remote-tracking branch 'origin/v5.1.0-rc' into HEAD

    @dschwoerer
    dschwoerer committed Jun 16, 2023
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Commits on Jun 17, 2023

  1. Merge pull request #2725 from boutproject/revert-sundials-detection 

    Revert sundials detection
    @bendudson
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Commits on Jun 19, 2023

  1. Merge pull request #2724 from boutproject/ci-fix-static 

    Fix static CI build
    @ZedThree
    ZedThree authored Jun 19, 2023
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  2. Merge pull request #2726 from boutproject/bump-clang-tidy-review 

    Bump `clang-tidy-review` version
    @ZedThree
    ZedThree authored Jun 19, 2023
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  3. Merge branch 'v5.1.0-rc' into dist-via-boutpp

    @ZedThree
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Commits on Jun 20, 2023

  1. Merge branch 'v5.1.0-rc' into docker-ci

    @dschwoerer
    dschwoerer committed Jun 20, 2023
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Commits on Jun 28, 2023

  1. Update to dnf5

    @dschwoerer
    dschwoerer committed Jun 28, 2023
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Commits on Jun 30, 2023

  1. Merge pull request #2731 from boutproject/dnf5 

    CI: Install dnf5 for Fedora
    @ZedThree
    ZedThree authored Jun 30, 2023
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  2. Merge pull request #2511 from boutproject/docker-ci 

    Build containers in GHA CI
    @ZedThree
    ZedThree authored Jun 30, 2023
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  3. Merge pull request #2708 from boutproject/dist-via-boutpp 

    Generate BOUT++ tar via boutpp backend
    @ZedThree
    ZedThree authored Jun 30, 2023
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Commits on Jul 2, 2023

  1. Improving compatibility with fmt 10

    @dschwoerer
    dschwoerer committed Jul 2, 2023
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  2. Add helper for ierr checking

    @dschwoerer
    dschwoerer committed Jul 2, 2023
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  3. Use helper for snes error

    @dschwoerer
    dschwoerer committed Jul 2, 2023
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  4. Use new ierr checker

    @dschwoerer
    dschwoerer committed Jul 2, 2023
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  5. Explicitly cast to int for fmt10

    @dschwoerer
    dschwoerer committed Jul 2, 2023
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  6. Static cast also for printing

    @dschwoerer
    dschwoerer committed Jul 2, 2023
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  7. Add missing include

    @dschwoerer
    dschwoerer committed Jul 2, 2023
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  8. Add missing include

    @dschwoerer
    dschwoerer committed Jul 2, 2023
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  9. SNESGetConvergedReasonString was introduced only in PETSc 3.15

    @dschwoerer
    dschwoerer committed Jul 2, 2023
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  10. Apply clang-format changes

    @dschwoerer @github-actions
    dschwoerer authored and github-actions[bot] committed Jul 2, 2023
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Commits on Jul 12, 2023

  1. Remove h5py - we only support netcdf

    @dschwoerer
    dschwoerer committed Jul 12, 2023
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Commits on Jul 26, 2023

  1. Merge pull request #2735 from boutproject/no-h5py 

    Remove h5py - we only support netcdf
    @bendudson
    bendudson authored Jul 26, 2023
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  2. Merge pull request #2730 from boutproject/fmt10 

    Improving compatibility with fmt 10
    @ZedThree
    ZedThree authored Jul 26, 2023
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Commits on Aug 6, 2023

  1. Merge branch 'v5.1.0-rc' into bugfix-fvops-yalign

    @bendudson
    bendudson committed Aug 6, 2023
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  2. Merge pull request #2722 from boutproject/bugfix-fvops-yalign 

    Fix FV::Div_a_Grad_perp Y alignment
    @bendudson
    bendudson authored Aug 6, 2023
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Commits on Sep 13, 2023

  1. Prefer dnf5 

    dnf5 is faster, and is sufficiently feature complete for our needs
    @dschwoerer
    dschwoerer authored Sep 13, 2023
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  2. Change default to rawhide 

    This is what is tested in CI
    @dschwoerer
    dschwoerer committed Sep 13, 2023
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  3. Ensure submodules are present for local testing

    @dschwoerer
    dschwoerer committed Sep 13, 2023
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  4. Default to current working directory

    @dschwoerer
    dschwoerer committed Sep 13, 2023
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  5. Switch to fedora packes 

    Should be faster and more consistent
    @dschwoerer
    dschwoerer committed Sep 13, 2023
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Commits on Sep 15, 2023

  1. CI: switch to mpich to workaround openmpi issue

    @dschwoerer
    dschwoerer committed Sep 15, 2023
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Commits on Sep 22, 2023

  1. Switch back to openmpi

    @dschwoerer
    dschwoerer committed Sep 22, 2023
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  2. Also give a backtrace if we are hitting a bus error

    @dschwoerer
    dschwoerer committed Sep 22, 2023
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Commits on Oct 6, 2023

  1. Try disabeling PETSc

    @dschwoerer
    dschwoerer committed Oct 6, 2023
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  2. CI: Reenable petsc

    @dschwoerer
    dschwoerer committed Oct 6, 2023
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  3. CI: Use more system packages

    @dschwoerer
    dschwoerer committed Oct 6, 2023
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  4. Do not try to print KSPConvergedReason

    @dschwoerer
    dschwoerer committed Oct 6, 2023
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  5. Cast reason to int for formatting

    @dschwoerer
    dschwoerer committed Oct 6, 2023
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  6. Apply clang-format changes

    @dschwoerer @github-actions
    dschwoerer authored and github-actions[bot] committed Oct 6, 2023
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