WIP: Adios io #2913
Workflow file for this run
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| name: Tests | |
| on: [push, pull_request] | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| standard_tests: | |
| timeout-minutes: 60 | |
| name: ${{ matrix.config.name }} | |
| runs-on: ${{ matrix.config.os }} | |
| env: | |
| BOUT_TEST_TIMEOUT: "6m" | |
| PETSC_DIR: /usr/lib/petscdir/petsc3.12/x86_64-linux-gnu-real | |
| PETSC_ARCH: "" | |
| SLEPC_DIR: /usr/lib/slepcdir/slepc3.12/x86_64-linux-gnu-real/ | |
| SLEPC_ARCH: "" | |
| OMP_NUM_THREADS: ${{ matrix.config.omp_num_threads }} | |
| PYTHONPATH: ${{ github.workspace }}/tools/pylib | |
| OMPI_MCA_rmaps_base_oversubscribe: yes | |
| MPIRUN: mpiexec -np | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # Need this to be able to exclude the coverage job | |
| is_master_or_next: | |
| - ${{ github.ref == 'refs/heads/master' || github.ref == 'refs/heads/next' || github.base_ref == 'master' || github.base_ref == 'next' }} | |
| config: | |
| - name: "Default options, Ubuntu 20.04" | |
| os: ubuntu-20.04 | |
| configure_options: "" | |
| script_flags: "-uim" | |
| - name: "Optimised, shared, Python" | |
| os: ubuntu-20.04 | |
| configure_options: "--enable-shared | |
| --enable-checks=no | |
| --enable-optimize=3 | |
| --disable-signal | |
| --disable-track | |
| --disable-backtrace | |
| --with-petsc | |
| --with-slepc | |
| --with-sundials=/home/runner/local" | |
| script_flags: "-uim -t shared -t python" | |
| omp_num_threads: 1 | |
| - name: "Debug, shared" | |
| os: ubuntu-20.04 | |
| configure_options: "--enable-shared | |
| --enable-sigfpe | |
| --enable-debug | |
| --enable-track | |
| --with-petsc | |
| --with-slepc | |
| --with-sundials=/home/runner/local" | |
| script_flags: "-uim" | |
| omp_num_threads: 1 | |
| - name: "CMake, shared, release" | |
| os: ubuntu-latest | |
| cmake_options: "-DBUILD_SHARED_LIBS=ON | |
| -DBOUT_ENABLE_OPENMP=ON | |
| -DCMAKE_BUILD_TYPE=Release | |
| -DBOUT_USE_PETSC=ON | |
| -DBOUT_USE_SLEPC=ON | |
| -DBOUT_USE_SUNDIALS=ON | |
| -DBOUT_BUILD_DOCS=OFF | |
| -DSUNDIALS_ROOT=/home/runner/local" | |
| omp_num_threads: 2 | |
| - name: "CMake, shared, OpenMP, 3D metrics" | |
| os: ubuntu-latest | |
| cmake_options: "-DBUILD_SHARED_LIBS=ON | |
| -DBOUT_ENABLE_METRIC_3D=ON | |
| -DBOUT_ENABLE_OPENMP=ON | |
| -DBOUT_USE_PETSC=ON | |
| -DBOUT_USE_SLEPC=ON | |
| -DBOUT_USE_SUNDIALS=ON | |
| -DBOUT_ENABLE_PYTHON=ON | |
| -DSUNDIALS_ROOT=/home/runner/local" | |
| omp_num_threads: 2 | |
| - name: "CMake, new PETSc" | |
| os: ubuntu-20.04 | |
| cmake_options: "-DBUILD_SHARED_LIBS=ON | |
| -DBOUT_ENABLE_METRIC_3D=ON | |
| -DBOUT_ENABLE_OPENMP=ON | |
| -DBOUT_USE_PETSC=ON | |
| -DBOUT_USE_SLEPC=ON | |
| -DBOUT_USE_SUNDIALS=ON | |
| -DBOUT_ENABLE_PYTHON=ON | |
| -DSUNDIALS_ROOT=/home/runner/local | |
| -DPETSC_DIR=/home/runner/local/petsc | |
| -DSLEPC_DIR=/home/runner/local/slepc" | |
| build_petsc: -petsc | |
| - name: "Coverage" | |
| os: ubuntu-20.04 | |
| configure_options: "--enable-shared | |
| --enable-code-coverage | |
| --enable-debug | |
| --enable-track | |
| --with-lapack | |
| --with-petsc | |
| --with-slepc | |
| --with-sundials=/home/runner/local" | |
| omp_num_threads: 1 | |
| script_flags: "-u" | |
| exclude: | |
| # Don't run the coverage tests if the branch isn't master or next | |
| - is_master_or_next: false | |
| config: | |
| name: "Coverage" | |
| steps: | |
| - name: Job information | |
| run: | | |
| echo Build: ${{ matrix.config.name }}, ${{ matrix.config.os }} | |
| echo Configure options: ${{ matrix.config.configure_options }} | |
| echo CMake options: ${{ matrix.config.cmake_options }} | |
| - name: Install dependencies | |
| run: sudo apt update && | |
| sudo apt install -y | |
| libfftw3-dev | |
| libnetcdf-dev | |
| libnetcdf-c++4-dev | |
| netcdf-bin | |
| python3 | |
| python3-pip | |
| python3-pytest | |
| python3-numpy | |
| python3-scipy | |
| lcov | |
| openmpi-bin | |
| libopenmpi-dev | |
| petsc-dev | |
| slepc-dev | |
| liblapack-dev | |
| libparpack2-dev | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: Install pip packages | |
| run: | | |
| ./.pip_install_for_ci.sh 'cython~=0.29' 'netcdf4~=1.5' 'sympy~=1.5' 'gcovr' 'cmake' 'h5py' 'zoidberg' 'natsort' | |
| # Add the pip install location to the runner's PATH | |
| echo ~/.local/bin >> $GITHUB_PATH | |
| - name: Cache SUNDIALS build | |
| uses: actions/cache@v2 | |
| with: | |
| path: /home/runner/local | |
| key: bout-sundials-${{ matrix.config.os }}${{ matrix.config.build_petsc }} | |
| - name: Build SUNDIALS | |
| run: ./.build_sundials_for_ci.sh | |
| - name: Build PETSc | |
| run: BUILD_PETSC=${{ matrix.config.build_petsc }} ./.build_petsc_for_ci.sh | |
| - name: Build (configure) | |
| if: ${{ ! contains(matrix.config.name, 'CMake') }} | |
| run: ./.ci_script.sh ${{ matrix.config.script_flags }} | |
| env: | |
| LD_LIBRARY_PATH: /home/runner/local/lib:$LD_LIBRARY_PATH | |
| CONFIGURE_OPTIONS: ${{ matrix.config.configure_options }} | |
| - name: Build (CMake) | |
| if: ${{ contains(matrix.config.name, 'CMake') }} | |
| run: ./.ci_with_cmake.sh ${{ matrix.config.cmake_options }} | |
| - name: Capture coverage | |
| if: ${{ matrix.config.name == 'Coverage' }} | |
| # Explicitly run the coverage capture target, because | |
| # ci_script.sh also does the upload, and we're going to do | |
| # that ourselves in the next step | |
| run: | | |
| # Ensure that there is a corresponding .gcda file for every .gcno file | |
| # This is to try and make the coverage report slightly more accurate | |
| # It still won't include, e.g. any solvers we don't build with though | |
| find . -name "*.gcno" -exec sh -c 'touch -a "${1%.gcno}.gcda"' _ {} \; | |
| make code-coverage-capture | |
| - name: Upload coverage | |
| if: ${{ matrix.config.name == 'Coverage' }} | |
| uses: codecov/codecov-action@v1 | |
| Fedora: | |
| # This is its own job as it doesn't use most of the steps of the | |
| # standard_tests | |
| timeout-minutes: 60 | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Build Fedora rawhide | |
| run: ./.ci_fedora.sh setup openmpi rawhide | |
| shell: bash | |
| env: | |
| TRAVIS_BUILD_DIR: ${{ github.workspace }} |