Merge pull request #3 from boasvdp/add_actions #10
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| name: assembly_snptyper test | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest} | |
| name: Testing assembly_snptyper ${{ matrix.config.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-environment: true | |
| environment-file: env.yaml | |
| - name: Conda list | |
| shell: bash -l {0} | |
| run: conda list | |
| - name: Test M1UK typing end-to-end | |
| shell: bash -l {0} | |
| run: bash tests/test_e2e.sh |