Github action get pytest conf from biothings. #474
Workflow file for this run
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name: User Geneset Tests | |
on: | |
push: {} | |
pull_request: | |
branches: | |
- master | |
jobs: | |
run_user_geneset_tests: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: [ "3.8", "3.9", "3.10", "3.11", "3.12" ] | |
services: | |
elasticsearch: | |
image: docker.elastic.co/elasticsearch/elasticsearch:8.5.2 | |
env: | |
discovery.type : single-node | |
xpack.security.enabled: false | |
xpack.security.http.ssl.enabled: false | |
xpack.security.transport.ssl.enabled: false | |
options: >- | |
--health-cmd "curl http://localhost:9200/_cluster/health" | |
--health-interval 10s | |
--health-timeout 5s | |
--health-retries 10 | |
ports: | |
- 9200:9200 | |
steps: | |
- name: Create ES Index | |
run: | | |
sleep 60 | |
curl -X PUT http://localhost:9200/user_genesets | |
- name: Clone frontend repo | |
uses: actions/checkout@v3 | |
with: | |
repository: biothings/mygeneset.info-website | |
path: mygeneset.info-website | |
- name: Set up Node | |
uses: actions/setup-node@v2 | |
with: | |
node-version: "16" | |
- name: Install packages | |
run: yarn install | |
working-directory: mygeneset.info-website | |
- name: Build app | |
run: yarn build | |
working-directory: mygeneset.info-website | |
- name: Start Frontend | |
run: | | |
yarn serve & | |
sleep 30 | |
working-directory: mygeneset.info-website | |
- name: Checkout MyGeneset source | |
uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Upgrade pip | |
run: pip install --upgrade pip | |
- name: Install dependencies | |
run: pip install -r requirements_web.txt | |
- name: Get web config file | |
run: wget https://gist.githubusercontent.com/ravila4/9f20d64f51fc23c10b1b70b679a7d3ab/raw/1199ab75b78cc71549fa73e6283810cf2c081682/config.py | |
working-directory: src | |
- name: Start API | |
run: python index.py --webapp & | |
working-directory: src | |
env: | |
ORCID_CLIENT_ID: ${{ secrets.ORCID_CLIENT_ID }} | |
ORCID_CLIENT_SECRET: ${{ secrets.ORCID_CLIENT_SECRET }} | |
- name: Install PyTest | |
run: pip install pytest | |
- name: Install Selenium | |
run: pip install selenium | |
- name: Install Selenium Wire | |
run: pip install selenium-wire | |
- name: Install Webdriver Manager | |
run: pip install webdriver-manager | |
- name: Install Blinker | |
run: pip install blinker==1.7.0 | |
- name: Install/Upgrade setuptools | |
run: pip install --upgrade setuptools | |
- name: Run App Tests | |
run: pytest test_user_genesets.py | |
working-directory: src/tests | |
env: | |
ORCID_USERNAME: ${{ secrets.ORCID_USERNAME }} | |
ORCID_PASSWORD: ${{ secrets.ORCID_PASSWORD }} | |
GITHUB_USERNAME: ${{ secrets.GIT_HUB_USERNAME }} | |
GITHUB_PASSWORD: ${{ secrets.GIT_HUB_PASSWORD }} | |
- name: Setup tmate debug session on failure | |
if: ${{ failure() }} | |
uses: mxschmitt/action-tmate@v3 |