Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Pathfinder dryrun feature #216

Merged
merged 3 commits into from
Sep 26, 2024
Merged

Pathfinder dryrun feature #216

merged 3 commits into from
Sep 26, 2024

Conversation

rjawesome
Copy link
Contributor

Pass in the POST option dryrun_pathfinder=true (same format as the dryrun option)

Example logs:

{
      "timestamp": "2024-09-09T22:47:53.576Z",
      "level": "INFO",
      "message": "Pathfinder Template A: (PUBCHEM.COMPOUND:445154) -(regulates,regulated_by,affects,affected_by,interacts_with,associated_with)-> (Gene) -(regulates,regulated_by,affects,affected_by,interacts_with)-> (NCBIGene:2739)",
      "code": null
    },
    {
      "timestamp": "2024-09-09T22:47:53.576Z",
      "level": "INFO",
      "message": "Pathfinder Template B: (PUBCHEM.COMPOUND:445154) -(regulates,regulated_by,affects,affected_by,interacts_with,associated_with)-> (Gene) -(regulates,regulated_by,affects,affected_by,interacts_with,correlated_with)-> (Gene,ChemicalEntity) -(regulates,regulated_by,affects,affected_by,interacts_with,associated_with)-> (NCBIGene:2739)",
      "code": null
    },
    {
      "timestamp": "2024-09-09T22:47:53.576Z",
      "level": "INFO",
      "message": "Pathfinder Template C: (PUBCHEM.COMPOUND:445154) -(regulates,regulated_by,affects,affected_by,interacts_with,associated_with)-> (Gene) -(regulates,regulated_by,affects,affected_by,interacts_with)-> (Gene) -(regulates,regulated_by,affects,affected_by,interacts_with)-> (NCBIGene:2739)",
      "code": null
    },

biothings/biothings_explorer#862

@tokebe tokebe merged commit 7eebeaa into main Sep 26, 2024
0 of 2 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants