-
Notifications
You must be signed in to change notification settings - Fork 2
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
fix: add MEDDRA id mapping for Disease semantic type #62
Conversation
Pull Request Test Coverage Report for Build 1043972245
💛 - Coveralls |
@@ -207,7 +207,8 @@ export const APIMETA: MetaDataItemsObject = { | |||
GARD: ['mondo.xrefs.gard', 'disease_ontology.xrefs.gard'], | |||
HP: ['mondo.xrefs.hp'], | |||
SNOMEDCT: ['mondo.xrefs.sctid', 'umls.snomed.preferred', 'umls.snomed.non-preferred'], | |||
NCIT: ['mondo.xrefs.ncit', 'disease_ontology.xrefs.ncit'] | |||
NCIT: ['mondo.xrefs.ncit', 'disease_ontology.xrefs.ncit'], | |||
MEDDRA: ['mondo.xrefs.meddra', 'disease_ontology.xrefs.meddra'], |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
will the trailing comma here cause any problems?
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
add a test for MEDDRA id @colleenXu |
I've put it in my to-do list as a non-urgent task. I'll contact later for guidance on how to write the test / where to put it |
Note that we have changed to using refactored ID resolver with SRI-based service (dev)... It's not clear if code like this is used anymore, or what kind of tests need to be done (discussions in biothings/biothings_explorer#283 and issues that I will create later) |
Addresses biothings/biothings_explorer#217
For BTE to use these operations and handle ID resolution correctly: NCATS-Tangerine/translator-api-registry#72