chore: tslint auto-formatting

biothings · Aug 16, 2021 · 87068f8 · 87068f8
1 parent 9cecbec
commit 87068f8
Showing 1 changed file with 133 additions and 17 deletions.
diff --git a/src/config.ts b/src/config.ts
@@ -82,19 +82,66 @@ export const APIMETA: MetaDataItemsObject = {
     },
   },
   SmallMolecule: {
-    id_ranks: ['CHEBI', 'CHEMBL.COMPOUND', 'DRUGBANK', 'PUBCHEM.COMPOUND', 'MESH', 'INCHI', 'INCHIKEY', 'UNII', 'KEGG.COMPOUND', 'UMLS', 'LINCS', 'CAS', 'HMDB', 'name'],
+    id_ranks: [
+      'CHEBI',
+      'CHEMBL.COMPOUND',
+      'DRUGBANK',
+      'PUBCHEM.COMPOUND',
+      'MESH',
+      'INCHI',
+      'INCHIKEY',
+      'UNII',
+      'KEGG.COMPOUND',
+      'UMLS',
+      'LINCS',
+      'CAS',
+      'HMDB',
+      'name',
+    ],
     semantic: 'SmallMolecule',
     api_name: 'mychem.info',
     url: 'https://mychem.info/v1/query',
     mapping: {
-      'CHEMBL.COMPOUND': ['chembl.molecule_chembl_id', 'drugbank.xrefs.chembl', 'drugcentral.xrefs.chembl_id', 'unichem.chembl'],
-      DRUGBANK: ['drugcentral.xrefs.drugbank_id', 'pharmgkb.xrefs.drugbank', 'chebi.xrefs.drugbank', 'drugbank.id', 'unichem.drugbank'],
-      'PUBCHEM.COMPOUND': ['pubchem.cid', 'drugbank.xrefs.pubchem.cid', 'drugcentral.xrefs.pubchem_cid', 'pharmgkb.xrefs.pubchem.cid', 'chebi.xrefs.pubchem.cid', 'unichem.pubchem'],
-      CHEBI: ['chebi.id', 'chembl.chebi_par_id', 'drugbank.xrefs.chebi', 'drugcentral.xrefs.chebi', 'pharmgkb.xrefs.chebi', 'unichem.chebi'],
+      'CHEMBL.COMPOUND': [
+        'chembl.molecule_chembl_id',
+        'drugbank.xrefs.chembl',
+        'drugcentral.xrefs.chembl_id',
+        'unichem.chembl',
+      ],
+      DRUGBANK: [
+        'drugcentral.xrefs.drugbank_id',
+        'pharmgkb.xrefs.drugbank',
+        'chebi.xrefs.drugbank',
+        'drugbank.id',
+        'unichem.drugbank',
+      ],
+      'PUBCHEM.COMPOUND': [
+        'pubchem.cid',
+        'drugbank.xrefs.pubchem.cid',
+        'drugcentral.xrefs.pubchem_cid',
+        'pharmgkb.xrefs.pubchem.cid',
+        'chebi.xrefs.pubchem.cid',
+        'unichem.pubchem',
+      ],
+      CHEBI: [
+        'chebi.id',
+        'chembl.chebi_par_id',
+        'drugbank.xrefs.chebi',
+        'drugcentral.xrefs.chebi',
+        'pharmgkb.xrefs.chebi',
+        'unichem.chebi',
+      ],
       UMLS: ['drugcentral.xrefs.umlscui', 'pharmgkb.xrefs.umls', 'umls.cui'],
       MESH: ['umls.mesh', 'drugcentral.xrefs.mesh_descriptor_ui', 'ginas.xrefs.MESH', 'pharmgkb.xrefs.mesh'],
       UNII: ['drugcentral.xrefs.unii', 'unii.unii', 'aeolus.unii', 'ginas.unii'],
-      INCHIKEY: ['drugbank.inchi_key', 'ginas.inchikey', 'unii.inchikey', 'chebi.inchikey', 'chembl.inchi_key', 'pubchem.inchi_key'],
+      INCHIKEY: [
+        'drugbank.inchi_key',
+        'ginas.inchikey',
+        'unii.inchikey',
+        'chebi.inchikey',
+        'chembl.inchi_key',
+        'pubchem.inchi_key',
+      ],
       INCHI: ['drugbank.inchi', 'chebi.inchi', 'chembl.inchi', 'pharmgkb.inchi', 'pubchem.inchi'],
       'KEGG.COMPOUND': ['drugbank.xrefs.kegg.cid', 'chebi.xrefs.kegg_compound', 'pharmgkb.xrefs.kegg_compound'],
       LINCS: ['unichem.lincs', 'chebi.xrefs.lincs'],
@@ -117,19 +164,68 @@ export const APIMETA: MetaDataItemsObject = {
     },
   },
   Drug: {
-    id_ranks: ['CHEBI', 'CHEMBL.COMPOUND', 'DRUGBANK', 'PUBCHEM.COMPOUND', 'MESH', 'INCHI', 'INCHIKEY', 'UNII', 'KEGG.COMPOUND', 'UMLS', 'LINCS', 'CAS', 'HMDB', 'RXCUI', 'NDC', 'name'],
+    id_ranks: [
+      'CHEBI',
+      'CHEMBL.COMPOUND',
+      'DRUGBANK',
+      'PUBCHEM.COMPOUND',
+      'MESH',
+      'INCHI',
+      'INCHIKEY',
+      'UNII',
+      'KEGG.COMPOUND',
+      'UMLS',
+      'LINCS',
+      'CAS',
+      'HMDB',
+      'RXCUI',
+      'NDC',
+      'name',
+    ],
     semantic: 'Drug',
     api_name: 'mychem.info',
     url: 'https://mychem.info/v1/query',
     mapping: {
-      'CHEMBL.COMPOUND': ['chembl.molecule_chembl_id', 'drugbank.xrefs.chembl', 'drugcentral.xrefs.chembl_id', 'unichem.chembl'],
-      DRUGBANK: ['drugcentral.xrefs.drugbank_id', 'pharmgkb.xrefs.drugbank', 'chebi.xrefs.drugbank', 'drugbank.id', 'unichem.drugbank'],
-      'PUBCHEM.COMPOUND': ['pubchem.cid', 'drugbank.xrefs.pubchem.cid', 'drugcentral.xrefs.pubchem_cid', 'pharmgkb.xrefs.pubchem.cid', 'chebi.xrefs.pubchem.cid', 'unichem.pubchem'],
-      CHEBI: ['chebi.id', 'chembl.chebi_par_id', 'drugbank.xrefs.chebi', 'drugcentral.xrefs.chebi', 'pharmgkb.xrefs.chebi', 'unichem.chebi'],
+      'CHEMBL.COMPOUND': [
+        'chembl.molecule_chembl_id',
+        'drugbank.xrefs.chembl',
+        'drugcentral.xrefs.chembl_id',
+        'unichem.chembl',
+      ],
+      DRUGBANK: [
+        'drugcentral.xrefs.drugbank_id',
+        'pharmgkb.xrefs.drugbank',
+        'chebi.xrefs.drugbank',
+        'drugbank.id',
+        'unichem.drugbank',
+      ],
+      'PUBCHEM.COMPOUND': [
+        'pubchem.cid',
+        'drugbank.xrefs.pubchem.cid',
+        'drugcentral.xrefs.pubchem_cid',
+        'pharmgkb.xrefs.pubchem.cid',
+        'chebi.xrefs.pubchem.cid',
+        'unichem.pubchem',
+      ],
+      CHEBI: [
+        'chebi.id',
+        'chembl.chebi_par_id',
+        'drugbank.xrefs.chebi',
+        'drugcentral.xrefs.chebi',
+        'pharmgkb.xrefs.chebi',
+        'unichem.chebi',
+      ],
       UMLS: ['drugcentral.xrefs.umlscui', 'pharmgkb.xrefs.umls', 'umls.cui'],
       MESH: ['umls.mesh', 'drugcentral.xrefs.mesh_descriptor_ui', 'ginas.xrefs.MESH', 'pharmgkb.xrefs.mesh'],
       UNII: ['drugcentral.xrefs.unii', 'unii.unii', 'aeolus.unii', 'ginas.unii'],
-      INCHIKEY: ['drugbank.inchi_key', 'ginas.inchikey', 'unii.inchikey', 'chebi.inchikey', 'chembl.inchi_key', 'pubchem.inchi_key'],
+      INCHIKEY: [
+        'drugbank.inchi_key',
+        'ginas.inchikey',
+        'unii.inchikey',
+        'chebi.inchikey',
+        'chembl.inchi_key',
+        'pubchem.inchi_key',
+      ],
       INCHI: ['drugbank.inchi', 'chebi.inchi', 'chembl.inchi', 'pharmgkb.inchi', 'pubchem.inchi'],
       'KEGG.COMPOUND': ['drugbank.xrefs.kegg.cid', 'chebi.xrefs.kegg_compound', 'pharmgkb.xrefs.kegg_compound'],
       LINCS: ['unichem.lincs', 'chebi.xrefs.lincs'],
@@ -171,14 +267,34 @@ export const APIMETA: MetaDataItemsObject = {
     },
   },
   Disease: {
-    id_ranks: ['MONDO', 'DOID', 'OMIM', 'ORPHANET', 'SNOMEDCT', 'NCIT', 'EFO', 'UMLS', 'MESH', 'HP', 'GARD', 'MEDDRA', 'name'],
+    id_ranks: [
+      'MONDO',
+      'DOID',
+      'OMIM',
+      'ORPHANET',
+      'SNOMEDCT',
+      'NCIT',
+      'EFO',
+      'UMLS',
+      'MESH',
+      'HP',
+      'GARD',
+      'MEDDRA',
+      'name',
+    ],
     semantic: 'Disease',
     api_name: 'mydisease.info',
     url: 'https://mydisease.info/v1/query',
     mapping: {
       MONDO: ['mondo.mondo', 'disgenet.xrefs.mondo'],
       DOID: ['mondo.xrefs.doid', 'disease_ontology.doid', 'disgenet.xrefs.doid'],
-      UMLS: ['mondo.xrefs.umls', 'mondo.xrefs.umls_cui', 'disgenet.xrefs.umls', 'umls.umls', 'disease_ontology.xrefs.umls_cui'],
+      UMLS: [
+        'mondo.xrefs.umls',
+        'mondo.xrefs.umls_cui',
+        'disgenet.xrefs.umls',
+        'umls.umls',
+        'disease_ontology.xrefs.umls_cui',
+      ],
       name: ['mondo.label', 'disgenet.xrefs.disease_name', 'disease_ontology.name'],
       MESH: ['mondo.xrefs.mesh', 'disease_ontology.xrefs.mesh', 'ctd.mesh'],
       OMIM: ['mondo.xrefs.omim', 'hpo.omim', 'disgenet.xrefs.omim', 'disease_ontology.xrefs.omim'],
@@ -237,7 +353,7 @@ export const APIMETA: MetaDataItemsObject = {
     url: 'https://biothings.ncats.io/go_cc/query',
     mapping: {
       GO: ['_id'],
-      MetaCyc: ['xrefs.metacyc'],  // field missing in the API?
+      MetaCyc: ['xrefs.metacyc'], // field missing in the API?
       name: ['name'],
     },
   },
@@ -269,7 +385,7 @@ export const APIMETA: MetaDataItemsObject = {
       UBERON: ['_id'],
       UMLS: ['xrefs.umls'],
       MESH: ['xrefs.mesh'],
-      NCIT: ['xrefs.ncit'],  // field missing in the API?
+      NCIT: ['xrefs.ncit'], // field missing in the API?
       name: ['name'],
     },
   },
@@ -282,7 +398,7 @@ export const APIMETA: MetaDataItemsObject = {
       CL: ['_id'],
       NCIT: ['xrefs.ncit'],
       MESH: ['xrefs.mesh'],
-      EFO: ['xrefs.efo'],  // field missing in the API?
+      EFO: ['xrefs.efo'], // field missing in the API?
       name: ['name'],
     },
   },