Merge pull request #35 from biothings/biolink-4.1.4

Biolink 4.1.6
biothings · Mar 11, 2024 · 72d7404 · 72d7404
2 parents ced082c + 6b32623
commit 72d7404
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Showing 3 changed files with 895 additions and 269 deletions.
diff --git a/__test__/integration/class_tree.test.ts b/__test__/integration/class_tree.test.ts
@@ -51,14 +51,14 @@ describe("Test BioLink Class Tree class", () => {
                 [
                     tree.objects.SmallMolecule,
                     tree.objects.NucleicAcidEntity,
-                    tree.objects.Exon,
-                    tree.objects.Transcript,
-                    tree.objects.RnaProduct,
-                    tree.objects.RnaProductIsoform,
-                    tree.objects.NoncodingRnaProduct,
-                    tree.objects.MicroRna,
-                    tree.objects.SiRna,
-                    tree.objects.CodingSequence
+                    // tree.objects.Exon,
+                    // tree.objects.Transcript,
+                    // tree.objects.RnaProduct,
+                    // tree.objects.RnaProductIsoform,
+                    // tree.objects.NoncodingRnaProduct,
+                    // tree.objects.MicroRna,
+                    // tree.objects.SiRna,
+                    // tree.objects.CodingSequence
                 ]
             );
             expect(tree.objects.NamedThing).not.toBeUndefined;

diff --git a/__test__/integration/slot_tree.test.ts b/__test__/integration/slot_tree.test.ts
@@ -37,8 +37,8 @@ describe("Test BioLink Slot Tree class", () => {
               'affects_response_to',
               'regulates',
               'disrupts',
-              'ameliorates',
-              'exacerbates',
+              'ameliorates_condition',
+              'exacerbates_condition',
               'has_adverse_event',
               'has_side_effect',
             ]);
@@ -47,7 +47,7 @@ describe("Test BioLink Slot Tree class", () => {
         test("Test non-explicit inverses are correctly inferred", () => {
             tree.construct();
             expect(tree.objects.treats.inverse).toEqual("treated_by");
-            expect(tree.objects.prevents.inverse).toEqual("prevented_by");
+            expect(tree.objects.preventative_for_condition.inverse).toEqual("condition_prevented_by");
             expect(tree.objects.catalyzes.inverse).toEqual('has_catalyst');
         })
     })