Releases: biosustain/cameo
Releases · biosustain/cameo
0.13.6
Still figuring out the deployment action
0.13.5 chore: don't forget to build package before deploying it
Move to official pypi GH action
0.13.4 chore: use official pypi GH action and pypi API token
Skip pickling problems
0.13.3 Skip more pickle problems
Fix twine/pypi issue
0.13.2 fix: set explicitly the auth tokens for twine (#285)
Small cobrapy compatibility fix
Merge devel into master (#284) * Replace Travis with github actions (#270) * chore: replace travis with gh actions * test: replace TRAVIS env var with CI * test: run CI only linux for now * chore: add release gh action * docs: add docs gh action * fix: get syntax and deps right * chore: merge docs with release action * fix: install openbabel on CI * refactor: merge release and main actions * fix: use secrets for publishing to pypi * chore: install CPLEX on CI py3.6 * fix: typo * fix: extract cplex properly * chore: schedule CI run every month * Fix plotting (#272) * fix: update escher everywhere * docs: explain how to work in jupyterlab * style: apply flake8 * docs: format missing code block properly * fix: remove docstring typo * Refactor bounds behaviour (#273) * fix: update escher everywhere * docs: explain how to work in jupyterlab * style: apply flake8 * docs: format missing code block properly * refactor: adopt new bounds behavior https://github.com/opencobra/cobrapy/issues/793 * style: improve readability * docs: add badge to binder (#274) * Docs enhance (#276) * fix: update escher everywhere * docs: explain how to work in jupyterlab * style: apply flake8 * docs: format missing code block properly * docs: show favicon * docs: regenerate tutorial notebooks * style: use :py: in API links Co-authored-by: Moritz E. Beber <[email protected]> * style: remove WARNING Co-authored-by: Moritz E. Beber <[email protected]> * fix: reconcile blocked with excluded reactions in OptKnock * chore: unpin optlang * chore: update pickles Co-authored-by: Jorge Carrasco <[email protected]> Co-authored-by: Moritz E. Beber <[email protected]>
Change of plotting API
0.13.0 Merge branch 'devel' of https://github.com/biosustain/cameo into devel
Keeping up with the rest of the world
- Dropping Python 2
- Fixes regarding dependency changes (Pandas etc.)
Fix pathway predictions containing native exchanges after cobrapy change
0.11.12 fix: predicted pathways containing exchange reactions for native comp…
Hot fix integer cut clash in PathwayPredictor
0.11.11 hotfix: fix integercut ID clash in PathwayPredictor