update to dirs #13
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| name: Continuous Integration | |
| # TODO: add main here | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| - "major-bigraph-refactor" | |
| jobs: | |
| test-microservices: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10' | |
| - name: Install deps and run tests | |
| run: | | |
| pip install --upgrade pip | |
| pip install poetry | |
| poetry env use 3.10 | |
| poetry install --only=github | |
| poetry run pytest | |
| build-base-image: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Get new base image version | |
| run: | | |
| BASE_VERSION=$(cat ./assets/.BASE_VERSION) | |
| echo "BASE_VERSION=$BASE_VERSION" >> $GITHUB_ENV | |
| echo "Base Version: $BASE_VERSION" | |
| - name: Create gcloud config artifact | |
| run: | | |
| echo "$BIOSIMULATIONS_GCLOUD_CONFIG" > ./assets/docker/configs/.biosimulations.json | |
| env: | |
| BIOSIMULATIONS_GCLOUD_CONFIG: ${{ secrets.BIO_JSON_CONTENT }} | |
| - name: Test build base image | |
| run: | | |
| docker build --no-cache -f ./Dockerfile-base -it ghcr.io/biosimulators/bio-compose-server-base:${{ env.BASE_VERSION }} . | |
| get-microservice-versions: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| # Step 5: Extract API container version | |
| - name: Extract API container version | |
| id: extract_api_version | |
| run: | | |
| API_VERSION=$(python3 .github/parse_container_version.py api) | |
| echo "API_VERSION=$API_VERSION" >> $GITHUB_ENV | |
| echo "API Version: $API_VERSION" | |
| # Step 6: Extract worker container version | |
| - name: Extract worker container version | |
| id: extract_worker_version | |
| run: | | |
| WORKER_VERSION=$(python3 .github/parse_container_version.py worker) | |
| echo "WORKER_VERSION=$WORKER_VERSION" >> $GITHUB_ENV | |
| echo "WORKER Version: $WORKER_VERSION" | |
| # Step 7: Debug output of extracted versions | |
| - name: Debug output of extracted versions | |
| run: | | |
| echo "API_VERSION=${{ env.API_VERSION }}" | |
| echo "WORKER_VERSION=${{ env.WORKER_VERSION }}" | |
| build-microservice-images: | |
| needs: get-microservice-versions | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10' | |
| - name: Log in to GHCR | |
| run: echo "${{ secrets.REPO_ADMIN_GHCR_TOKEN }}" | docker login ghcr.io -u "${{ secrets.REPO_ADMIN_GH_USERNAME }}" --password-stdin | |
| - name: Install Docker Compose | |
| run: | | |
| sudo curl -L "https://github.com/docker/compose/releases/download/$(curl -s https://api.github.com/repos/docker/compose/releases/latest | grep 'tag_name' | cut -d\" -f4)/docker-compose-$(uname -s)-$(uname -m)" -o /usr/local/bin/docker-compose | |
| sudo chmod +x /usr/local/bin/docker-compose | |
| docker-compose --version # Check if Docker Compose is installed correctly | |
| - name: Build Docker containers with Docker Compose | |
| run: docker-compose build |