Merge branch 'dev' of ssh://github.com/biosimulators/Biosimulators_XP…

…P into dev
biosimulators · Aug 18, 2021 · 5ce9fb2 · 5ce9fb2
2 parents dd77207 + 622a0a4
commit 5ce9fb2
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Showing 10 changed files with 113 additions and 33 deletions.
diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.0.1',
+    VERSION: '0.0.2',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/docs/about.html b/docs/about.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>About BioSimulators-XPP &#8212; BioSimulators-XPP 0.0.1 documentation</title>
+    <title>About BioSimulators-XPP &#8212; BioSimulators-XPP 0.0.2 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
     <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>

diff --git a/docs/genindex.html b/docs/genindex.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Index &#8212; BioSimulators-XPP 0.0.1 documentation</title>
+    <title>Index &#8212; BioSimulators-XPP 0.0.2 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
     <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
@@ -160,12 +160,20 @@ <h2 id="B">B</h2>
 <h2 id="E">E</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="source/biosimulators_xpp.html#biosimulators_xpp.core.exec_sed_task">exec_sed_task() (in module biosimulators_xpp.core)</a>
+      <li><a href="source/biosimulators_xpp.html#biosimulators_xpp.exec_sed_task">exec_sed_task() (in module biosimulators_xpp)</a>
+
+      <ul>
+        <li><a href="source/biosimulators_xpp.html#biosimulators_xpp.core.exec_sed_task">(in module biosimulators_xpp.core)</a>
 </li>
+      </ul></li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="source/biosimulators_xpp.html#biosimulators_xpp.core.exec_sedml_docs_in_combine_archive">exec_sedml_docs_in_combine_archive() (in module biosimulators_xpp.core)</a>
+      <li><a href="source/biosimulators_xpp.html#biosimulators_xpp.exec_sedml_docs_in_combine_archive">exec_sedml_docs_in_combine_archive() (in module biosimulators_xpp)</a>
+
+      <ul>
+        <li><a href="source/biosimulators_xpp.html#biosimulators_xpp.core.exec_sedml_docs_in_combine_archive">(in module biosimulators_xpp.core)</a>
 </li>
+      </ul></li>
       <li><a href="source/biosimulators_xpp.html#biosimulators_xpp.utils.exec_xpp_simulation">exec_xpp_simulation() (in module biosimulators_xpp.utils)</a>
 </li>
   </ul></td>
@@ -180,7 +188,7 @@ <h2 id="G">G</h2>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="source/biosimulators_xpp.html#biosimulators_xpp.utils.get_simulation_method_kisao_map">get_simulation_method_kisao_map() (in module biosimulators_xpp.utils)</a>
 </li>
-      <li><a href="source/biosimulators_xpp.html#biosimulators_xpp.utils.get_xpp_version">get_xpp_version() (in module biosimulators_xpp.utils)</a>
+      <li><a href="source/biosimulators_xpp.html#biosimulators_xpp.get_simulator_version">get_simulator_version() (in module biosimulators_xpp)</a>
 </li>
   </ul></td>
 </tr></table>

diff --git a/docs/index.html b/docs/index.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>BioSimulators-XPP documentation &#8212; BioSimulators-XPP 0.0.1 documentation</title>
+    <title>BioSimulators-XPP documentation &#8212; BioSimulators-XPP 0.0.2 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
     <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>

diff --git a/docs/installation.html b/docs/installation.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Installation instructions &#8212; BioSimulators-XPP 0.0.1 documentation</title>
+    <title>Installation instructions &#8212; BioSimulators-XPP 0.0.2 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
     <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>

diff --git a/docs/py-modindex.html b/docs/py-modindex.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Python Module Index &#8212; BioSimulators-XPP 0.0.1 documentation</title>
+    <title>Python Module Index &#8212; BioSimulators-XPP 0.0.2 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
     <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>

diff --git a/docs/search.html b/docs/search.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Search &#8212; BioSimulators-XPP 0.0.1 documentation</title>
+    <title>Search &#8212; BioSimulators-XPP 0.0.2 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
 

diff --git a/docs/searchindex.js b/docs/searchindex.js