BuddySuite V1.0

First full release of BuddySuite!

Following is the list of tools included in Version 1.0

SeqBuddy

delete_repeats
pull_random_record
reverse_complement
list_ids
molecular_weight
make_ids_unique
find_restriction_sites
find_pattern
order_features_alphabetically
pull_record_ends
delete_features
translate
select_frame
count_residues
ave_seq_length
merge
hash_seq_ids
group_by_prefix
translate6frames
delete_large
uppercase
pull_records
order_ids
find_CpG
rename_ids
group_by_regex
blast
order_features_by_position
lowercase
delete_metadata
guess_alphabet
reverse_transcribe
complement
clean_seq
extract_region
replace_subseq
delete_records
isoelectric_point
screw_formats
delete_small
guess_format
concat_seqs
num_seqs
transcribe
bl2seq
insert_seq
annotate
order_ids_randomly
degenerate_sequence
find_repeats
map_features_nucl2prot
map_features_prot2nucl
list_features
purge
count_codons
shuffle_seqs
back_translate

AlignBuddy

concat_alignments
trimal
reverse_transcribe
mapfeat2align
list_ids
alignment_lengths
generate_alignment
clean_seq
delete_records
translate
screw_formats
rename_ids
split_to_files
enforce_triplets
extract_range
num_seqs
transcribe
consensus
uppercase
pull_records
order_ids
lowercase

PhyloBuddy

hash_ids
rename_ids
num_tips
unroot
list_ids
show_unique
screw_formats
split_polytomies
root
print_trees
display_trees
prune_taxa
distance
consensus_tree
generate_tree

DatabaseBuddy

guess_database
live_shell