Fix inferring category for NCBITaxon prefix in ObographJsonTransformer

Change OrganismalEntity to OrganismTaxon for NCBITaxon prefix
biolink · Jan 19, 2021 · 954be1d · 954be1d
1 parent 660070a
commit 954be1d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/kgx/transformers/json_transformer.py b/kgx/transformers/json_transformer.py
@@ -375,7 +375,7 @@ def get_category(self, curie: str, node: dict) -> Optional[str]:
             elif prefix == 'PR':
                 category = "biolink:Protein"
             elif prefix == 'NCBITaxon':
-                category = "biolink:OrganismalEntity"
+                category = "biolink:OrganismTaxon"
             else:
                 log.debug(f"{curie} Could not find a category mapping for '{category}'; Defaulting to 'biolink:OntologyClass'")
         return category