update linkml, linkml-runtime, bmt, tests to take advantage of newer biolink model #1
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| # This is a basic workflow to help you get started with Actions | |
| name: Run tests | |
| # Controls when the action will run. | |
| on: | |
| pull_request: | |
| types: [opened, synchronize, reopened] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| types: trigger-run-tests | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| test: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest ] | |
| python-version: [ "3.9", "3.10" ] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| #---------------------------------------------- | |
| # install poetry | |
| #---------------------------------------------- | |
| - name: Install Poetry | |
| run: pipx install poetry | |
| #---------------------------------------------- | |
| # check-out repo and set-up python | |
| #---------------------------------------------- | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'poetry' | |
| #---------------------------------------------- | |
| # install your root project, if required | |
| #---------------------------------------------- | |
| - name: Install library | |
| run: poetry install --no-interaction | |
| #---------------------------------------------- | |
| # run test suite | |
| #---------------------------------------------- | |
| - name: Setup Neo4j Docker | |
| run: | | |
| docker run --detach --name kgx-neo4j-unit-test -p 8484:7474 -p 8888:7687 --env NEO4J_AUTH=neo4j/test neo4j:4.3.0 | |
| docker run --detach --name kgx-neo4j-integration-test -p 7474:7474 -p 7687:7687 --env NEO4J_AUTH=neo4j/test neo4j:4.3.0 | |
| docker ps -a | |
| - name: Wait | |
| uses: jakejarvis/wait-action@master | |
| with: | |
| time: '45s' | |
| - name: Run tests | |
| run: | | |
| poetry run make test | |