Merge pull request #366 from Tomaz-Vieira/spec_v0_5__fix_core_io

Fixes typing issues in core.io

bioimageio/core/io.py

@@ -1,28 +1,14 @@
 from __future__ import annotations
 
-import collections.abc
-import io
-import os
-import shutil
-from dataclasses import dataclass
-from pathlib import Path
-from tempfile import NamedTemporaryFile, mkdtemp
-from typing import Any, Dict, List, Literal, Mapping, Optional, Sequence, TextIO, TypedDict, Union, cast
-from zipfile import ZIP_DEFLATED, ZipFile, is_zipfile
+from typing import List, Literal, Optional, Union
 
-import pooch
-from pydantic import AnyUrl, DirectoryPath, FilePath, HttpUrl, TypeAdapter
-from ruamel.yaml import YAML
-from typing_extensions import NotRequired, Unpack
-
-from bioimageio.spec import ResourceDescription
+from bioimageio.spec import build_description
 from bioimageio.spec import load_description as load_description
-from bioimageio.spec._internal.base_nodes import ResourceDescriptionBase
+from bioimageio.spec._description import ResourceDescr
 from bioimageio.spec._internal.constants import DISCOVER
-from bioimageio.spec._internal.types import FileName, RdfContent, RelativeFilePath, Sha256, ValidationContext, YamlValue
+from bioimageio.spec._internal.validation_context import ValidationContext
+from bioimageio.spec._internal.io_utils import open_bioimageio_yaml
 from bioimageio.spec.common import BioimageioYamlContent, FileSource, InvalidDescription
-from bioimageio.spec.model.v0_4 import WeightsFormat
-from bioimageio.spec.package import extract_file_name, get_resource_package_content
 from bioimageio.spec.summary import ValidationSummary
 
 
@@ -31,7 +17,7 @@ def load_description_and_validate(
     /,
     *,
     format_version: Union[Literal["discover"], Literal["latest"], str] = DISCOVER,
-) -> Union[ResourceDescription, InvalidDescription]:
+) -> Union[ResourceDescr, InvalidDescription]:
     opened = open_bioimageio_yaml(source)
 
     return build_description_and_validate(
@@ -47,15 +33,15 @@ def build_description_and_validate(
     *,
     context: Optional[ValidationContext] = None,
     format_version: Union[Literal["discover"], Literal["latest"], str] = DISCOVER,
-) -> Union[ResourceDescription, InvalidDescription]:
+) -> Union[ResourceDescr, InvalidDescription]:
     """load and validate a BioImage.IO description from the content of a resource description file (RDF)"""
-    descr = build_description(rdf_content, context=context, format_version=format_version)
+    rd = build_description(data, context=context, format_version=format_version)
     # todo: add dynamic validation
     return rd
 
 
 def validate(
-    source: RdfSource,
+    source: "FileSource | BioimageioYamlContent",
     /,
     *,
     context: Optional[ValidationContext] = None,