Skip to content

Issues: biocore/songbird

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

42 Open 72 Closed
42 Open 72 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Issues with first use of tensorboard
#171 opened Oct 21, 2024 by irc47
2
About SCFAs.
#170 opened Dec 29, 2023 by orange-3711
1
X axis of the CV error plots or tensorboard plots
#159 opened Mar 9, 2022 by manjumoorthy95
4
Can songbird be used in a Jupyter notebook without command line wrappers? question Further information is requested
#155 opened Jul 9, 2021 by jolespin
11
README installation instructions don't seem to work
#154 opened Jun 22, 2021 by wasade
3
missing column in songbird output
#153 opened Mar 24, 2021 by bck243
songbird 2?
#148 opened Jan 15, 2021 by Alxdu
3
ValueError: initial_value must have a shape specified: Tensor("random_normal:0", shape=(2, ?), dtype=float32)
#146 opened Dec 14, 2020 by BrettLoman
1
About filtering the input biom file
#145 opened Nov 25, 2020 by coralzhang
5
Memory errors for large datasets
#141 opened Oct 21, 2020 by mortonjt
4
Using songbird standalone
#134 opened Aug 5, 2020 by coralzhang
5
Error running songbird standalone
#133 opened Jul 13, 2020 by swokybio
7
confusing ID column names
#129 opened May 6, 2020 by redbluewater
1
TypeError: SparseDataFrame() takes no arguments dependencies tensorflow tensorflow tensorflow tensorflow tensorflow
#128 opened Apr 8, 2020 by sformel
6
More QIIME 2 / TensorFlow conda-forge installation problems ._. dependencies tensorflow tensorflow tensorflow tensorflow tensorflow
#126 opened Mar 31, 2020 by fedarko
@fedarko
6
Interpretation of differentials question Further information is requested
#119 opened Feb 26, 2020 by dadahan
7
Pandas versions should be pinned to be below v1 dependencies tensorflow tensorflow tensorflow tensorflow tensorflow
#117 opened Feb 21, 2020 by fedarko
3
Getting Q-squared values for standalone Songbird? enhancement New feature or request ui Improving the user interface
#113 opened Feb 7, 2020 by fedarko
3
Examples and/or more precise information on "good enough" data re: model fitting docs Improving the documentation
#112 opened Feb 6, 2020 by fedarko
2
More exact tests code internals Problems with the non-user-facing parts of the codebase -- e.g. style, tests
#111 opened Feb 4, 2020 by fedarko
Upgrading to TensorFlow v2 or PyTorch code internals Problems with the non-user-facing parts of the codebase -- e.g. style, tests dependencies tensorflow tensorflow tensorflow tensorflow tensorflow future ideas Going to take a substantial amount of effort to implement, but potentially doable in the future
#110 opened Feb 4, 2020 by fedarko
2
Make error message on invalid training column values more clear ui Improving the user interface
#102 opened Jan 8, 2020 by fedarko
1
Accounting for phylogenetic relation between samples in the formula? enhancement New feature or request future ideas Going to take a substantial amount of effort to implement, but potentially doable in the future ui Improving the user interface wontfix This will not be worked on
#97 opened Nov 12, 2019 by Jigyasa3
1
Adding --p-logging-dir option enhancement New feature or request
#91 opened Oct 21, 2019 by mortonjt
1
add examples of how model fitting plots *should not* look? docs Improving the documentation
#84 opened Oct 4, 2019 by fedarko
2
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.