Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

troubleshooting for bioconductor-alabaster.base #53137

Open
wants to merge 4 commits into
base: master
Choose a base branch
from
Open

troubleshooting for bioconductor-alabaster.base #53137

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
082eaff
rebuild alabaster.base
aliciaaevans Jan 8, 2025
c3e364e
adjust CXXFLAGS
aliciaaevans Jan 8, 2025
38b233d
try another option
aliciaaevans Jan 8, 2025
113995d
try another way
aliciaaevans Jan 8, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 5 additions & 5 deletions recipes/bioconductor-alabaster.base/build.sh
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,9 +4,9 @@ grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
mkdir -p ~/.R
echo -e "CC=$CC
FC=$FC
CXX=$CXX
CXX98=$CXX
CXX11=$CXX
CXX14=$CXX" > ~/.R/Makevars
export CXXFLAGS="${CXXFLAGS} -D_LIBCPP_DISABLE_AVAILABILITY"
CXX=$CXX -D_LIBCPP_DISABLE_AVAILABILITY
CXX98=$CXX -D_LIBCPP_DISABLE_AVAILABILITY
CXX11=$CXX -D_LIBCPP_DISABLE_AVAILABILITY
CXX14=$CXX -D_LIBCPP_DISABLE_AVAILABILITY
" > ~/.R/Makevars
$R CMD INSTALL --build .
104 changes: 0 additions & 104 deletions recipes/bioconductor-alabaster.base/build_failure.osx-64.yaml
View file
Open in desktop

This file was deleted.

8 changes: 0 additions & 8 deletions recipes/bioconductor-alabaster.base/conda_build_config.yaml
View file
Open in desktop

This file was deleted.

2 changes: 1 addition & 1 deletion recipes/bioconductor-alabaster.base/meta.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ about:
summary: Save Bioconductor Objects To File

build:
number: 0
number: 1
rpaths:
- lib/R/lib/
- lib/
Expand Down
Loading