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Add TE-Aid #44954

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Add TE-Aid #44954

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12 changes: 12 additions & 0 deletions recipes/te-aid/build.sh
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#!/bin/env bash

set -euo

PACKAGE_HOME=${PREFIX}/share/${PKG_NAME}-${PKG_VERSION}-${PKG_BUILDNUM}
mkdir -p ${PACKAGE_HOME}
cp -r ./* ${PACKAGE_HOME}

# Make TE-Aid executable available
mkdir -p ${PREFIX}/bin
chmod +x ${PACKAGE_HOME}/TE-Aid
ln -s ${PACKAGE_HOME}/TE-Aid ${PREFIX}/bin
39 changes: 39 additions & 0 deletions recipes/te-aid/meta.yaml
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{% set name = "TE-Aid" %}
{% set version = "0.1.0" %}
{% set sha256 = "2150a8bb7a16ceba29f824063dd7866da9e827e952b1dbf01fb61f0c89b18904" %}

package:
name: {{ name|lower }}
version: {{ version }}

source:
url: https://github.com/bricoletc/TE-Aid/archive/refs/tags/v{{ version }}.tar.gz
sha256: {{ sha256 }}

build:
noarch: generic
number: 0

requirements:
run:
- blast >=2.15.0
- emboss >=6.6.0
- r >=4.2

test:
commands:
- TE-Aid

about:
home: https://github.com/clemgoub/TE-Aid
dev_url: https://github.com/clemgoub/TE-Aid
license: MIT
# license_file: TODO
summary: "Annotation helper tool for the manual curation of transposable element consensus sequences"
description: |
TE-Aid is a shell+R program aimed to help the manual curation of transposable
elements (TE). It inputs a TE consensus sequence (fasta format) and requires a
reference genome (in fasta as well). TE-Aid produces 4 figures reporting i) the genomic
hits with divergence to consensus, ii) the genomic coverage of the consensus,
iii) a self dot-plot, and iv) a structure analysis including TIR and LTR suggestions,
open reading frames (ORFs) and TE protein hit annotation.
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