Merge branch 'main' into issue-52

biocommons · Sep 29, 2023 · 0ae914a · 0ae914a
2 parents fa2717f + ffd5dda
commit 0ae914a
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diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
@@ -14,7 +14,7 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v4
       with:
-        python-version: "3.10"
+        python-version: "3.11"
         cache: pip
         cache-dependency-path: '**/setup.cfg'
 

diff --git a/Makefile b/Makefile
@@ -10,7 +10,7 @@ SELF:=$(firstword $(MAKEFILE_LIST))
 
 PKG=eutils
 PKGD=$(subst .,/,${PKG})
-PYV:=3.8
+PYV:=3.11
 VEDIR=venv/${PYV}
 
 UNAME = $(shell uname)

diff --git a/README.md b/README.md
@@ -46,7 +46,7 @@ uvicorn anyvar.restapi.main:app --reload
 Or, more simply:
 
     make devready
-    source venv/bin/activate
+    source venv/3.11/bin/activate
 
 Then, start the REST server with:
 

diff --git a/src/anyvar/extras/vcf.py b/src/anyvar/extras/vcf.py
@@ -1,6 +1,6 @@
 """Support processing and manipulation of VCF objects."""
 import logging
-from typing import Dict, List, Optional
+from typing import Dict, Optional
 
 from ga4gh.vrs.extras.vcf_annotation import VCFAnnotator
 

diff --git a/tests/test_variation.py b/tests/test_variation.py
@@ -32,6 +32,7 @@ def test_put_allele(client, alleles):
     resp_json = resp.json()
     assert resp_json["messages"] == ['Unable to translate "BRAF amplification"']
     assert "object" not in resp_json
+    assert "object_id" not in resp_json
 
 
 def test_put_copy_number(client, copy_numbers):