Fixed bug for Reference vs Exp MDS plotting

biobenkj · Mar 15, 2016 · a97f3b8 · a97f3b8
1 parent 1a08f1d
commit a97f3b8
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/differential_expression.py b/differential_expression.py
@@ -274,7 +274,7 @@ def writeRscript(self, analysislocation, conditions_list):
                     mdssamps.append(Rvarlst[reffacnum])
                 for trtfacnum in range(0, trtgrouplength):
                     mdsgroup.append('2')
-                    mdssamps.append(Rvarlst[Rgrouplengths[batchcounter] - refgrouplength + trtfacnum])
+                    mdssamps.append(Rvarlst[Rgrouplengths[batchcounter] - trtgrouplength + trtfacnum])
                 mdsgroup = map(str, mdsgroup)
                 mdsgroupjoin = ','.join(mdsgroup)
                 de_expression.write('ReferenceCondvsExpCond{condval}'.format(condval=condval) + 'mdsgroup <- factor(c(' + mdsgroupjoin + '))\n')
@@ -375,4 +375,4 @@ def de_analysis_noninteractive(self, analysislocation, conditions_list):
         de.writeRscript(analysislocation, conditions_list)
         de.runRscript(analysislocation)
 
-        return
+        return