Skip to content

4.1.1

Latest
Latest
Compare
Choose a tag to compare
@fasnicar fasnicar released this 23 May 16:04
· 9 commits to master since this release
4.1.1
66d5a7e
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.

Version 4.1.1 (Mar 11th, 2024)

Database updates

  • We just released the new vJun23_202403 and vOct22_202403 databases
    • Same SGBs as for the vJun23_202307 and vOct22_202212 versions, respectively, but the NCBI taxonomy assignment has been fixed to keep the taxa consistent across the MetaPhlAn taxonomic tree, allowing accurate relative abundance estimation also at higher taxonomic levels

New features

  • [MetaPhlAn] The new fix_relab_mpa4.py script enables to fix errors in the relative abundances in profiles generated with previous databases
  • [MetaPhlAn] Implementation of the option --subsampling_paired [N_PAIRED_READS] to subsample paired-end input reads. It needs to be used in conjunction with -1 [FORWARD_READS_FILE] and -2 [REVERSE_READS_FILE]

Fixes

  • [MetaPhlAn] Fixed a bug that would halt MetaPhlAn execution when the option --profile_vsc was used but had no viral hits
  • [MetaPhlAn] Fixed a bug that would halt MetaPhlAn execution when the number of reads to map was zero
  • [StrainPhlAn] Fixed a bug in the new implementation (since v4.1) of –-print_clades_only
Assets 2
Loading