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@abmiguez abmiguez released this 23 Feb 09:04
· 90 commits to master since this release
4.0.5
d6a7284

Version 4.0.5 (Feb 23rd, 2023)

Database updates

  • We just released the new vOct22 database
  • Addition of ~200k new genomes
  • 3,580 more SGBs than the vJan21
  • 2,548 genomes considered reference genomes in vJan21 were relabelled as MAGs in NCBI -> 1,550 kSGBs in vJan21 are now uSGBs in vOct22
  • Removed redundant reference genomes from the vJan21 genomic database using a MASH distance threshold at 0.1%
  • Local reclustering to improve SGB definitions of oversized or too-close SGBs
  • Improved GGB and FGB definitions by reclustering SGB centroids from scratch
  • Improved phylum assignment of SGBs with no reference genomes at FGB level using MASH distances on amino acids to find the closest kSGB

Changed features

  • [StrainPhlAn] Improved StrainPhlAn's speed when running with the --print_clades_only option

Missing features

  • [MetaPhlAn] The GTDB taxonomic assignment for the vOct22 database is not available yet (expected release: end of Feb 2023)
  • [MetaPhlAn] The phylogenetic tree of life for the vOct22 database is not available yet (expected release: TBD).
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