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Francesco Beghini authored Jul 6, 2020
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Expand Up @@ -23,11 +23,7 @@ MetaPhlAn relies on ~1.1M unique clade-specific marker genes (the latest marker
* orders of magnitude speedups compared to existing methods.
* metagenomic strain-level population genomics

If you use MetaPhlAn version 1, please cite:

[**Metagenomic microbial community profiling using unique clade-specific marker genes.**](https://www.nature.com/articles/nmeth.2066) *Nicola Segata, Levi Waldron, Annalisa Ballarini, Vagheesh Narasimhan, Olivier Jousson, & Curtis Huttenhower*. Nature Methods 9, 811-814 (2012)

If you use MetaPhlAn2, please cite:
If you use MetaPhlAn, please cite:

[**MetaPhlAn2 for enhanced metagenomic taxonomic profiling.**](http://www.nature.com/nmeth/journal/v12/n10/pdf/nmeth.3589.pdf) *Duy Tin Truong, Eric A Franzosa, Timothy L Tickle, Matthias Scholz, George Weingart, Edoardo Pasolli, Adrian Tett, Curtis Huttenhower & Nicola Segata*. Nature Methods 12, 902-903 (2015)

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## Installation
The best way to install MetaPhlAn is through conda via the Bioconda channel. If you have not configured you Anaconda installation in order to fetch packages from Bioconda, please follow [these steps](https://bioconda.github.io/user/install.html#set-up-channels) in order to setup the channels.
The best way to install MetaPhlAn is through conda via the Bioconda channel. If you have not configured you Anaconda installation in order to fetch packages from Bioconda, **please follow [these steps](https://bioconda.github.io/user/install.html#set-up-channels) in order to setup the channels.**

You can install MetaPhlAn by running

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## MetaPhlAn2 and StrainPhlAn tutorials and resources
## MetaPhlAn and StrainPhlAn tutorials and resources

In addition to the information on this page, you can refer to the following additional resources.

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