Updates to version 4.1.1

biobakery · Mar 11, 2024 · c5e5922 · c5e5922
1 parent e4c526a
commit c5e5922
Show file tree

Hide file tree

Showing 22 changed files with 36,367 additions and 33 deletions.
diff --git a/bioconda_recipe/meta.yaml b/bioconda_recipe/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "metaphlan" %}
-{% set version = "4.1.0" %}
+{% set version = "4.1.1" %}
 
 package:
   name: {{ name }}

diff --git a/metaphlan/metaphlan.py b/metaphlan/metaphlan.py
@@ -5,8 +5,8 @@
               'Nicola Segata ([email protected]), '
               'Duy Tin Truong, '
               'Francesco Asnicar ([email protected])')
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 import sys
 try:

diff --git a/metaphlan/strainphlan.py b/metaphlan/strainphlan.py
@@ -5,8 +5,8 @@
               'Moreno Zolfo ([email protected]), '
               'Francesco Beghini ([email protected]),'
               'Michal Puncochar ([email protected]')
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 
 import argparse as ap
@@ -734,4 +734,4 @@ def main():
 
 if __name__ == '__main__':
     main()
-
+
diff --git a/metaphlan/utils/consensus_markers.py b/metaphlan/utils/consensus_markers.py
@@ -1,6 +1,6 @@
 __author__ = 'Aitor Blanco Miguez ([email protected])'
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 import json
 import os

diff --git a/metaphlan/utils/create_toy_database.py b/metaphlan/utils/create_toy_database.py
@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 __author__ = 'Aitor Blanco Miguez ([email protected])'
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 
 import bz2, os, pickle, time

diff --git a/metaphlan/utils/database_controller.py b/metaphlan/utils/database_controller.py
@@ -1,6 +1,6 @@
 __author__ = 'Aitor Blanco Miguez ([email protected])'
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 
 import os

diff --git a/metaphlan/utils/external_exec.py b/metaphlan/utils/external_exec.py
@@ -3,8 +3,8 @@
               'Francesco Asnicar ([email protected]), '
               'Moreno Zolfo ([email protected]), '
               'Francesco Beghini ([email protected])')
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 
 import os

diff --git a/metaphlan/utils/extract_markers.py b/metaphlan/utils/extract_markers.py
@@ -1,8 +1,8 @@
 #!/usr/bin/env python
 __author__ = ('Aitor Blanco Miguez ([email protected]), '
               'Francesco Beghini ([email protected])')
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 
 import os

diff --git a/metaphlan/utils/fix_relab_mpa4.py b/metaphlan/utils/fix_relab_mpa4.py
@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 __author__ = 'Aitor Blanco Miguez ([email protected])'
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 
 import os, time

diff --git a/metaphlan/utils/mpa_vJun23_CHOCOPhlAnSGB_202307_size.txt.bz2 b/metaphlan/utils/mpa_vJun23_CHOCOPhlAnSGB_202307_size.txt.bz2
diff --git a/metaphlan/utils/mpa_vJun23_CHOCOPhlAnSGB_202307_species.txt.bz2 b/metaphlan/utils/mpa_vJun23_CHOCOPhlAnSGB_202307_species.txt.bz2
diff --git a/metaphlan/utils/mpa_vJun23_CHOCOPhlAnSGB_202403.nwk b/metaphlan/utils/mpa_vJun23_CHOCOPhlAnSGB_202403.nwk
diff --git a/metaphlan/utils/mpa_vJun23_CHOCOPhlAnSGB_202403_SGB2GTDB.tsv b/metaphlan/utils/mpa_vJun23_CHOCOPhlAnSGB_202403_SGB2GTDB.tsv
diff --git a/metaphlan/utils/mpa_vJun23_CHOCOPhlAnSGB_202403_size.txt.bz2 b/metaphlan/utils/mpa_vJun23_CHOCOPhlAnSGB_202403_size.txt.bz2
diff --git a/metaphlan/utils/parallelisation.py b/metaphlan/utils/parallelisation.py
@@ -3,8 +3,8 @@
               'Francesco Asnicar ([email protected]), '
               'Moreno Zolfo ([email protected]), '
               'Francesco Beghini ([email protected])')
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 
 from typing import Iterable

diff --git a/metaphlan/utils/phylophlan_controller.py b/metaphlan/utils/phylophlan_controller.py
@@ -1,7 +1,7 @@
 __author__ = 'Aitor Blanco Miguez ([email protected]),' \
              'Michal Puncochar ([email protected])'
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 import abc
 import os

diff --git a/metaphlan/utils/plot_tree_graphlan.py b/metaphlan/utils/plot_tree_graphlan.py
@@ -1,8 +1,8 @@
 #!/usr/bin/env python
 __author__ = ('Duy Tin Truong ([email protected]), '
               'Aitor Blanco Miguez ([email protected])')
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 import argparse as ap
 import dendropy

diff --git a/metaphlan/utils/sample2markers.py b/metaphlan/utils/sample2markers.py
@@ -5,8 +5,8 @@
               'Francesco Asnicar ([email protected]), '
               'Moreno Zolfo ([email protected]), '
               'Francesco Beghini ([email protected])')
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 
 

diff --git a/metaphlan/utils/sgb_to_gtdb_profile.py b/metaphlan/utils/sgb_to_gtdb_profile.py
@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 __author__ = 'Aitor Blanco ([email protected]'
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 import os
 import time

diff --git a/metaphlan/utils/strain_transmission.py b/metaphlan/utils/strain_transmission.py
@@ -1,8 +1,8 @@
 #!/usr/bin/env python
 __author__ = ('Aitor Blanco ([email protected]), '
               'Mireia Valles-Colomer ([email protected])')
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 
 import os

diff --git a/metaphlan/utils/util_fun.py b/metaphlan/utils/util_fun.py
@@ -3,8 +3,8 @@
               'Francesco Asnicar ([email protected]), '
               'Moreno Zolfo ([email protected]), '
               'Francesco Beghini ([email protected])')
-__version__ = '4.1.0'
-__date__ = '23 Aug 2023'
+__version__ = '4.1.1'
+__date__ = '11 Mar 2024'
 
 import bz2
 import gzip

diff --git a/setup.py b/setup.py
@@ -14,7 +14,7 @@
 
 setuptools.setup(
     name='MetaPhlAn',
-    version='4.1.0',
+    version='4.1.1',
     author='Aitor Blanco-Miguez',
     author_email='[email protected]',
     url='http://github.com/biobakery/MetaPhlAn/',