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Delete fix_profiles #209

Delete fix_profiles

Delete fix_profiles #209

Workflow file for this run

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: Build MetaPhlAn package
on:
push:
branches: [ "master"]
pull_request:
branches: [ "master" ]
jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [ 3.7 ]
steps:
- uses: actions/checkout@v2
- name: Set up Python 3.7
uses: actions/setup-python@v1
with:
python-version: 3.7
- name: Install dependencies
run: |
pip install numpy scipy cython
sudo apt install bowtie2 muscle ncbi-blast+ raxml
pip install .
- name: Test
run: |
metaphlan -v
strainphlan -h
extract_markers.py -h
merge_metaphlan_tables.py -h
read_fastx.py -h
add_metadata_tree.py -h
plot_tree_graphlan.py -h
sample2markers.py -h
strain_transmission.py -h