Update CHANGELOG.md #192
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# This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
name: Build MetaPhlAn package | |
on: | |
push: | |
branches: [ "master"] | |
pull_request: | |
branches: [ "master" ] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: [ 3.7 ] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python 3.7 | |
uses: actions/setup-python@v1 | |
with: | |
python-version: 3.7 | |
- name: Install dependencies | |
run: | | |
pip install numpy scipy cython | |
sudo apt install bowtie2 muscle ncbi-blast+ raxml | |
pip install . | |
- name: Test | |
run: | | |
metaphlan -v | |
strainphlan -h | |
extract_markers.py -h | |
merge_metaphlan_tables.py -h | |
read_fastx.py -h | |
add_metadata_tree.py -h | |
plot_tree_graphlan.py -h | |
sample2markers.py -h | |
strain_transmission.py -h |