Added running demo

biobakery · Aug 19, 2021 · 622df7e · 622df7e
1 parent 17ec4e2
commit 622df7e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/test/run_demo.sh b/test/run_demo.sh
@@ -1,2 +1,2 @@
-MTXmodel.R ../inst/extdata/HMP2_pwyRNA.tsv ../inst/extdata/HMP2_metadata.tsv demo_output --min_abundance 0 --min_prevalence 0.0 --max_significance 0.25 --min_variance 0.0 --correction BH --standardize TRUE --normalization NONE --transform LOG --analysis_method LM --cores 1 --fixed_effects diagnosis,dysbiosisCD,dysbiosisUC,dysbiosisnonIBD,antibiotics,age --random_effects subject,site --plot_heatmap FALSE --plot_scatter FALSE --reference diagnosis,nonIBD --rna_dna_flt local --input_dnadata  ../inst/extdata/HMP2_pwyDNA.tsv
+MTXmodel.R ../inst/extdata/HMP2_pwyRNA.tsv ../inst/extdata/HMP2_metadata.tsv demo_output --min_abundance 0 --min_prevalence 0.0 --max_significance 0.25 --min_variance 0.0 --correction BH --standardize TRUE --normalization NONE --transform LOG --analysis_method LM --cores 1 --fixed_effects diagnosis,dysbiosisCD,dysbiosisUC,dysbiosisnonIBD,antibiotics,age --random_effects subject,site --plot_heatmap FALSE --plot_scatter FALSE --reference diagnosis,nonIBD --rna_dna_flt semi_strict --input_dnadata  ../inst/extdata/HMP2_pwyDNA.tsv