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Specify inkscape home dir
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bbimber committed Apr 19, 2024
1 parent b4e161f commit b1f1d01
Showing 1 changed file with 3 additions and 1 deletion.
4 changes: 3 additions & 1 deletion Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -67,7 +67,8 @@ RUN echo "local({r <- getOption('repos') ;r['CRAN'] = 'https://packagemanager.rs
&& mkdir /dockerHomeDir && chmod 777 /dockerHomeDir \
# This is to avoid the numba 'cannot cache function' error, such as: https://github.com/numba/numba/issues/5566
&& mkdir /numba_cache && chmod -R 777 /numba_cache \
&& mkdir /mpl_cache && chmod -R 777 /mpl_cache
&& mkdir /mpl_cache && chmod -R 777 /mpl_cache \
&& mkdir /inkscape && chmod -R 777 /inkscape

ENV RETICULATE_PYTHON=/usr/bin/python3

Expand All @@ -76,6 +77,7 @@ ENV NUMBA_CACHE_DIR=/numba_cache
ENV MPLCONFIGDIR=/mpl_cache

ENV CONGA_PNG_TO_SVG_UTILITY=inkscape
ENV INKSCAPE_PROFILE_DIR=/inkscape
ENV USE_GMMDEMUX_SEED=1

# Create location for BioConductor AnnotationHub/ExperimentHub caches:
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