Limit mGAP to 24.7 temporarily

bimberlabinternal · Jan 8, 2025 · 60cfada · 60cfada
1 parent cf861e8
commit 60cfada
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/scripts/downloadMedGenomeScript.sh b/scripts/downloadMedGenomeScript.sh
@@ -27,7 +27,7 @@ fi
 cd $DIRNAME
 
 HOST=portal-us.medgenome.com
-wget -nv -r -c --no-check-certificate --user= --password=${PW} --cut-dirs=1 --reject "index.html*" --reject-regex="_I1_|_I2_|Undetermined_" https://${HOST}/${USER}/FASTQ
+wget -nv -r -c --no-check-certificate --user=${DIRNAME} --password=${PW} --cut-dirs=1 --reject "index.html*" --reject-regex="_I1_|_I2_|Undetermined_" https://${HOST}/${DIRNAME}/FASTQ
 touch download.${DIRNAME}.done
 find . -name '*.gz' -exec mv {} ./ \;
 

diff --git a/servers/mgap/mgapSettings.sh b/servers/mgap/mgapSettings.sh
@@ -5,7 +5,7 @@ set -e
 #mGAP:
 
 MAJOR=24
-MINOR_FULL="11"
+MINOR_FULL="7"
 MINOR_SHORT=$MINOR_FULL
 
 LABKEY_HOME=/usr/local/labkey