Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closes #57 #686

Open
wants to merge 4 commits into
base: main
Choose a base branch
from

Conversation

clancyoftheoverflow
Copy link
Member

Please name your PR after the issue it closes. You can use the following line: "Closes #ISSUE-NUMBER" where you replace the ISSUE-NUMBER with the one corresponding to your dataset.

If the following information is NOT present in the issue, please populate:

  • Name: name of the dataset
  • Description: short description of the dataset (or link to social media or blog post)
  • Paper: link to the dataset paper if available
  • Data: link to the online home of the dataset

Checkbox

  • Confirm that this PR is linked to the dataset issue.
  • Create the dataloader script biodatasets/my_dataset/my_dataset.py (please use only lowercase and underscore for dataset naming).
  • Provide values for the _CITATION, _DATASETNAME, _DESCRIPTION, _HOMEPAGE, _LICENSE, _URLs, _SUPPORTED_TASKS, _SOURCE_VERSION, and _BIGBIO_VERSION variables.
  • Implement _info(), _split_generators() and _generate_examples() in dataloader script.
  • Make sure that the BUILDER_CONFIGS class attribute is a list with at least one BigBioConfig for the source schema and one for a bigbio schema.
  • Confirm dataloader script works with datasets.load_dataset function.
  • Confirm that your dataloader script passes the test suite run with python -m tests.test_bigbio biodatasets/my_dataset/my_dataset.py.
  • If my dataset is local, I have provided an output of the unit-tests in the PR (please copy paste). This is OPTIONAL for public datasets, as we can test these without access to the data files.

INFO:main:self.PATH: biodatasets/why_qa/why_qa.py
INFO:main:self.SUBSET_ID: why_qa
INFO:main:self.SCHEMA: None
INFO:main:self.DATA_DIR: /n2c2-community-annotations_2010-fan-why-QA.zip
INFO:main:Checking for _SUPPORTED_TASKS ...
INFO:main:Found _SUPPORTED_TASKS=[<Tasks.QUESTION_ANSWERING: 'QA'>]
INFO:main:_SUPPORTED_TASKS implies _MAPPED_SCHEMAS={'QA'}
INFO:main:schemas_to_check: {'QA'}
INFO:main:Checking load_dataset with config name why_qa_source
WARNING:datasets.builder:Using custom data configuration why_qa_source-e19a1d19cd3b66be
WARNING:datasets.builder:Reusing dataset why_qa_dataset (C:\Users\franc.cache\huggingface\datasets\why_qa_dataset\why_qa_source-e19a1d19cd3b66be\1.0.0\ec02e5a9a780df1b7936db1790c78fd0f075011437d01c3759501a2e5148c8a8)
100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 1/1 [00:00<?, ?it/s]
INFO:main:Checking load_dataset with config name why_qa_bigbio_qa
WARNING:datasets.builder:Using custom data configuration why_qa_bigbio_qa-e19a1d19cd3b66be
WARNING:datasets.builder:Reusing dataset why_qa_dataset (C:\Users\franc.cache\huggingface\datasets\why_qa_dataset\why_qa_bigbio_qa-e19a1d19cd3b66be\1.0.0\ec02e5a9a780df1b7936db1790c78fd0f075011437d01c3759501a2e5148c8a8)
100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 1/1 [00:00<00:00, 593.00it/s]
INFO:main:Checking global ID uniqueness
INFO:main:Found 0 unique IDs
INFO:main:Gathering schema statistics
INFO:main:Gathering schema statistics
train

INFO:main:QA ONLY: Checking multiple choice
.

Ran 1 test in 0.062s

OK

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant