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feat: scape special characters on contrasts
Playbase unittest #268: Pull request #213 opened by ESCRI11
January 23, 2025 11:30 5m 4s dev-special-char-contrasts
January 23, 2025 11:30 5m 4s
playbase::detectOutlierSamples: remove unused stats
Playbase unittest #267: Pull request #212 opened by zitoa
January 22, 2025 16:22 5m 22s detectOutliers-remove-unused-stats
January 22, 2025 16:22 5m 22s
use matrixStats for better efficiency
Playbase unittest #266: Pull request #211 opened by zitoa
January 17, 2025 10:49 5m 5s use-matrixStats
January 17, 2025 10:49 5m 5s
use matrixStats for better efficiency
Playbase unittest #265: Pull request #210 opened by zitoa
January 17, 2025 09:09 4m 59s use-matrixStats
January 17, 2025 09:09 4m 59s
fix bug: non-human gene sets that only shows GO (fix for issue #1318)
Playbase unittest #264: Pull request #209 opened by ivokwee
January 13, 2025 23:37 4m 42s fix-mouse-gsets
January 13, 2025 23:37 4m 42s
set robust=FALSE limma::eBayes if needed (var<=0)
Playbase unittest #263: Pull request #208 opened by zitoa
January 12, 2025 16:07 5m 56s fix-fitFDistRobustly
January 12, 2025 16:07 5m 56s
Improve wgcna
Playbase unittest #262: Pull request #206 opened by ivokwee
January 9, 2025 00:42 2m 59s improve-wgcna
January 9, 2025 00:42 2m 59s
Add deepnet methods and class
Playbase unittest #261: Pull request #203 opened by ivokwee
December 23, 2024 11:41 2m 36s add-deepnet
December 23, 2024 11:41 2m 36s
fix NA in contrasts error
Playbase unittest #260: Pull request #202 opened by ivokwee
December 23, 2024 11:40 5m 1s fix-NA-contrasts
December 23, 2024 11:40 5m 1s
Fix #1310: Heatmap, filter by one protein/gene breaks it
Playbase unittest #259: Pull request #201 opened by ESCRI11
December 18, 2024 10:44 4m 33s fix-1310
December 18, 2024 10:44 4m 33s
fix crash when annot_table has duplicated rownames. leave as matrix.
Playbase unittest #258: Pull request #200 opened by ivokwee
December 16, 2024 18:35 5m 0s fix-annotcrash
December 16, 2024 18:35 5m 0s
Fix #1301: No drug connectivity maps are being produced (v3.5.0+master241112)
Playbase unittest #257: Pull request #199 opened by ESCRI11
December 12, 2024 13:42 5m 11s fix-1301-opg
December 12, 2024 13:42 5m 11s
use standard fisher if corpora fails
Playbase unittest #256: Pull request #198 opened by zitoa
December 11, 2024 23:31 4m 55s fix-corpora-fisherpval
December 11, 2024 23:31 4m 55s
Move pathways from OPG
Playbase unittest #255: Pull request #196 synchronize by ESCRI11
December 6, 2024 11:15 4m 59s dev-pathbank
December 6, 2024 11:15 4m 59s
Move pathways from OPG
Playbase unittest #254: Pull request #196 opened by ESCRI11
December 6, 2024 10:12 4m 44s dev-pathbank
December 6, 2024 10:12 4m 44s
Move pathways from OPG
Playbase unittest #253: Pull request #195 opened by ESCRI11
December 6, 2024 10:08 4m 40s move-pathways
December 6, 2024 10:08 4m 40s
Correct nb for ncol(X)<=6
Playbase unittest #252: Pull request #194 opened by zitoa
December 3, 2024 15:05 4m 48s fix-plotOutliers-if-Z-NA
December 3, 2024 15:05 4m 48s
Fix #1291: Data upload UMAP error
Playbase unittest #251: Pull request #193 opened by ESCRI11
December 2, 2024 15:59 7m 15s fix-1291
December 2, 2024 15:59 7m 15s
Fix tests
Playbase unittest #250: Pull request #192 opened by ESCRI11
November 27, 2024 13:56 4m 34s fix-tests
November 27, 2024 13:56 4m 34s
fix: make sure contrasts is new style
Playbase unittest #249: Pull request #191 opened by ESCRI11
November 26, 2024 14:27 6m 5s fix-old-contrasts
November 26, 2024 14:27 6m 5s
fix RUV error on Lxgn data
Playbase unittest #248: Pull request #190 opened by ivokwee
November 25, 2024 15:46 6m 7s fix-ruv
November 25, 2024 15:46 6m 7s
wip-polishing-playbase-code
Playbase unittest #247: Pull request #177 synchronize by zitoa
November 20, 2024 16:14 6m 27s wip-polish-code
November 20, 2024 16:14 6m 27s
Fix phenoclustering phenocorrelation
Playbase unittest #246: Pull request #185 synchronize by ESCRI11
November 20, 2024 14:21 5m 43s fix-phenoclustering-phenocorrelation
November 20, 2024 14:21 5m 43s
Fix #1276: Sample information multiple errors
Playbase unittest #245: Pull request #189 opened by ESCRI11
November 20, 2024 13:37 5m 26s fix-1276-opg
November 20, 2024 13:37 5m 26s
add display_name (common name) column; remove non-used columns
Playbase unittest #244: Pull request #188 opened by ivokwee
November 19, 2024 08:39 5m 31s update-species-table
November 19, 2024 08:39 5m 31s