file=R/compute2-extra.R,line=19,col=28,[indentation_linter] Indentation should be 2 spaces but is 28 spaces.

file=R/compute2-extra.R,line=43,col=6,[indentation_linter] Indentation should be 20 spaces but is 6 spaces.

file=R/compute2-extra.R,line=53,col=22,[object_usage_linter] no visible global function definition for 'pgx.computeCoreGOgraph'

file=R/compute2-extra.R,line=114,col=14,[object_usage_linter] no visible global function definition for 'pgx.calculateWordCloud'

file=R/compute2-extra.R,line=131,col=11,[object_usage_linter] no visible global function definition for 'pgxinfo.updateDatasetFolder'

file=R/compute2-extra.R,line=146,col=23,[object_usage_linter] no visible global function definition for 'pgx.computeConnectivityScores'

file=R/compute2-extra.R,line=169,col=20,[object_usage_linter] no visible global function definition for 'pgx.wgcna'

file=R/compute2-extra.R,line=245,col=10,[object_usage_linter] no visible global function definition for 'pgx.multipleDeconvolution'

file=R/compute2-extra.R,line=272,col=16,[object_usage_linter] no visible global function definition for 'pgx.getOrganism'