Bump htsjdk from 2.19.0 to 3.0.1 #590
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Bumps [htsjdk](https://github.com/samtools/htsjdk) from 2.19.0 to 3.0.1. - [Release notes](https://github.com/samtools/htsjdk/releases) - [Commits](samtools/htsjdk@2.19.0...3.0.1) --- updated-dependencies: - dependency-name: com.github.samtools:htsjdk dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]>
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Bumps htsjdk from 2.19.0 to 3.0.1.
Release notes
Sourced from htsjdk's releases.
... (truncated)
Commits
4a4024aFix temporary directory hijacking or temporary directory information disclosu...9fd0ecfDisable codecov until we can fix the uploader (#1622)347c0acFix EdgeReadIterator (#1616)d15a5baAdded ULTIMA and ELEMENT as valid value for RG-PL according to SAM spec. (#1619)489c419Support CRAM reference regions. (#1605)f461401Silence AsciiLineReader warning when creating a FASTA sequence index (#1559)1449decSupport loading of CSI from URLs/streams. #1507 (#1595)22aec67Fix decoding of CRAM Scores read feature during normalization. (#1592)70e4259Remove unnecessary println in test (#1602)6507249Make the CRAM MD5 failure message more user friendly. (#1607)Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting
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