bump hooks, reorganize extra-deps

.github/workflows/python_tests.yml

@@ -80,8 +80,10 @@ jobs:
       with:
         name: docs-artifact
         path: docs/_build/html
+        include-hidden-files: true
 
     - name: Upload coverage report
       uses: codecov/codecov-action@v5
       with:
+        token: ${{ secrets.CODECOV_TOKEN }}
         files: ./coverage.xml

.pre-commit-config.yaml

@@ -2,7 +2,7 @@
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.4.0
+  rev: v5.0.0
   hooks:
     - id: trailing-whitespace
     - id: end-of-file-fixer
@@ -13,14 +13,14 @@ repos:
     - id: check-case-conflict
     - id: check-docstring-first
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.2.1
+  rev: v0.8.0
   hooks:
     - id: ruff
       args: [ --fix ]
     - id: ruff-format
 
 - repo: https://github.com/pappasam/toml-sort
-  rev: v0.23.1
+  rev: v0.24.2
   hooks:
     - id: toml-sort-fix
       files: pyproject.toml

.readthedocs.yaml

@@ -12,8 +12,8 @@ sphinx:
   configuration: docs/conf.py
 
 python:
-   install:
-   - method: pip
-     path: .
-     extra_requirements:
-       - dev
+  install:
+  - method: pip
+    path: .
+    extra_requirements:
+      - docs

docs/conf.py

@@ -2,6 +2,7 @@
 
 See: https://www.sphinx-doc.org/en/master/usage/configuration.html
 """
+
 import os
 import sys
 from datetime import date

docs/sphinxext/gh_substitutions.py

@@ -6,6 +6,7 @@
 https://doughellmann.com/blog/2010/05/09/defining-custom-roles-in-sphinx/
 
 """
+
 from docutils.nodes import reference
 from docutils.parsers.rst.roles import set_classes
 

pyproject.toml

@@ -37,18 +37,26 @@ readme = "README.rst"
 requires-python = ">=3.9"
 
 [project.optional-dependencies]
-dev = [
-  "check-manifest",
+dev = ["ipykernel", "ipython", "pybv[test,docs]"]
+# Dependencies for developer installations
+docs = [
   "intersphinx_registry",
-  "mne",
+  "matplotlib",
   "numpydoc",
+  "sphinx",
+  "sphinx-copybutton",
+]
+test = [
+  "build",
+  "check-manifest",
+  "matplotlib",
+  "mne",
   "pre-commit",
   "pytest",
   "pytest-cov",
   "pytest-sugar",
   "ruff",
-  "sphinx",
-  "sphinx-copybutton",
+  "twine",
 ]
 
 [project.urls]