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[FIX] fix dead links (#542)
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* [FIX] fix dead links

* fix

* update config

* update links
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@Remi-Gau
Remi-Gau authored Oct 19, 2024
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3 changes: 1 addition & 2 deletions docs/blog/posts/2023-05-25-steering-group-minutes.md
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Expand Up @@ -135,8 +135,7 @@ Add a list of BIDS ignore files:
Should we reach out to the new **Imaging Neuroscience** journal while
they are still developing their platform?

Potentially reach out to someone on their [[editorial
board]](https://janeway.imaging-neuroscience.org/editorialteam/)
Potentially reach out to someone on their [editorial board](https://direct.mit.edu/imag/pages/editorial-info)

- possible Thomas Yeo, Damian Fair

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2 changes: 1 addition & 1 deletion docs/blog/posts/bids-news-september-2024.md
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Expand Up @@ -47,7 +47,7 @@ You can find more [about BIDS governance](https://bids-website.readthedocs.io/en

## Recent venues BIDS presented

BIDS continues to be featured in different venues. Our very own maintainer extraordinaire, Rémi Gau, was recently featured in a yet-to-be-released podcast. The BIDS Town Hall was featured at OHBM again this year in June. For a full recount refer to [this blog post](https://bids-website.readthedocs.io/en/latest/blog/2024/07/01/BIDS%20Town%20Hall%202024%3A%20summary.html).
BIDS continues to be featured in different venues. Our very own maintainer extraordinaire, Rémi Gau, was recently featured in a yet-to-be-released podcast. The BIDS Town Hall was featured at OHBM again this year in June. For a full recount refer to [this blog post](./town-hall-2024-debrief.md).

## BIDS Extension Proposals (BEPs)

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28 changes: 14 additions & 14 deletions docs/getting_started/resources/talks.md
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Expand Up @@ -20,20 +20,20 @@ Two great resources for curated lists of talks and slides are:

## Other Slideshows and talk

| Title | Speaker | Year | Occasion | Location | Video | Slides |
| -------------------------------------------------------------------------------- | ----------------------------------- | ---- | ----------------------------------------------------------------------------------------------------------------------------------------------------- | ------------------------------------ | -------------------------------------------------------------------------------------------- | ---------------------------------------------------------------------------------------------------------------------------- |
| BIDS: underlying data management principles | Remi Gau | 2022 | [Open Research at the Wellcome Centre for Integrative Neuroimaging (WIN)](https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community/) | Online | [link](https://vimeo.com/showcase/7645853/video/668642973) | [link](https://osf.io/h6gsr/) |
| BIDS: a recipe for success | Patricia Clement | 2021 | [GlimR](https://glimr.eu/) BIDS workshop | | [link](https://www.youtube.com/watch?v=ukgiAP2Hn3E) | [link](https://osf.io/nu24a) |
| BIDS conversion | Remi Gau & Guiomar Niso | 2021 | ACCS & OHBM Webinar and Workshop Series | online | [link](https://www.youtube.com/watch?v=m7vEHGpqQIw) | [link](https://remi-gau.github.io/bids_cookbook/) |
| The BIDS Ecosystem | Chris Markiewicz | 2020 | Neuro Data Science School | Online | n/a | [link](https://effigies.github.io/bids-ecosystem/) |
| BIDS Applications and Derivatives | Chris Markiewicz | 2019 | BIDS Computational Models Workshop | Princeton USA | n/a | [link](https://effigies.github.io/bids-derivatives/) |
| BIDS Apps Metadata | Chris Markiewicz | 2019 | Making Open Neuroscience Infrastructure Interoperable (MONII 2.0) | Montreal, Canada | n/a | [link](https://effigies.github.io/bids-metadata/) |
| BIDS - Open Science Working Group | A Shephard | 2018 | n/a | Aston University, Birmingham England | n/a | [link](https://github.com/bids-standard/bids-starter-kit/files/2068336/Brain.Imaging.Data.Structure.-.OSWG.pptx) |
| FAIR Data - BIDS datasets | Maryann Martone & Jeffrey Grethe | 2018 | OHBM | Singapore | [link](https://www.pathlms.com/ohbm/courses/8246/sections/12542/video_presentations/115883#) | n/a |
| ReproIn: automatic, shareable, version-controlled BIDS datasets from MR scanners | Matteo Visconti di Oleggio Castello | 2018 | OHBM | Singapore | n/a | [link](https://www.pathlms.com/ohbm/courses/8246/sections/12541/video_presentations/115999#) |
| OpenNeuro presentation | Krzysztof Gorgolewski | 2017 | OHBM | Vancouver, Canada | [link](https://www.pathlms.com/ohbm/courses/5158/sections/7806/video_presentations/76062#) | [link](https://www.slideshare.net/chrisfilo1/openneuro-a-free-online-platform-for-sharing-and-analysis-of-neuroimaging-data) |
| fMRIprep | Krzysztof Gorgolewski | 2017 | n/a | Stanford University, Stanford USA | n/a | [link](https://www.slideshare.net/chrisfilo1/fmriprep-robust-and-easy-to-use-fmri-preprocessing-pipeline) |
| BIDS | Krzysztof Gorgolewski | 2016 | OHBM | Geneva, Switzerland | n/a | [link](https://www.slideshare.net/chrisfilo1/the-brain-imaging-data-structure-ohbm-2016) |
| Title | Speaker | Year | Occasion | Location | Video | Slides |
| -------------------------------------------------------------------------------- | ----------------------------------- | ---- | ------------------------------------------------------------------------| ------------------------------------ | -------------------------------------------------------------------------------------------- | ---------------------------------------------------------------------------------------------------------------------------- |
| BIDS: underlying data management principles | Remi Gau | 2022 | Open Research at the Wellcome Centre for Integrative Neuroimaging (WIN) | Online | [link](https://vimeo.com/showcase/7645853/video/668642973) | [link](https://osf.io/h6gsr/) |
| BIDS: a recipe for success | Patricia Clement | 2021 | [GlimR](https://glimr.eu/) BIDS workshop | | [link](https://www.youtube.com/watch?v=ukgiAP2Hn3E) | [link](https://osf.io/nu24a) |
| BIDS conversion | Remi Gau & Guiomar Niso | 2021 | ACCS & OHBM Webinar and Workshop Series | online | [link](https://www.youtube.com/watch?v=m7vEHGpqQIw) | [link](https://remi-gau.github.io/bids_cookbook/) |
| The BIDS Ecosystem | Chris Markiewicz | 2020 | Neuro Data Science School | Online | n/a | [link](https://effigies.github.io/bids-ecosystem/) |
| BIDS Applications and Derivatives | Chris Markiewicz | 2019 | BIDS Computational Models Workshop | Princeton USA | n/a | [link](https://effigies.github.io/bids-derivatives/) |
| BIDS Apps Metadata | Chris Markiewicz | 2019 | Making Open Neuroscience Infrastructure Interoperable (MONII 2.0) | Montreal, Canada | n/a | [link](https://effigies.github.io/bids-metadata/) |
| BIDS - Open Science Working Group | A Shephard | 2018 | n/a | Aston University, Birmingham England | n/a | [link](https://github.com/bids-standard/bids-starter-kit/files/2068336/Brain.Imaging.Data.Structure.-.OSWG.pptx) |
| FAIR Data - BIDS datasets | Maryann Martone & Jeffrey Grethe | 2018 | OHBM | Singapore | [link](https://www.pathlms.com/ohbm/courses/8246/sections/12542/video_presentations/115883#) | n/a |
| ReproIn: automatic, shareable, version-controlled BIDS datasets from MR scanners | Matteo Visconti di Oleggio Castello | 2018 | OHBM | Singapore | n/a | [link](https://www.pathlms.com/ohbm/courses/8246/sections/12541/video_presentations/115999#) |
| OpenNeuro presentation | Krzysztof Gorgolewski | 2017 | OHBM | Vancouver, Canada | [link](https://www.pathlms.com/ohbm/courses/5158/sections/7806/video_presentations/76062#) | [link](https://www.slideshare.net/chrisfilo1/openneuro-a-free-online-platform-for-sharing-and-analysis-of-neuroimaging-data) |
| fMRIprep | Krzysztof Gorgolewski | 2017 | n/a | Stanford University, Stanford USA | n/a | [link](https://www.slideshare.net/chrisfilo1/fmriprep-robust-and-easy-to-use-fmri-preprocessing-pipeline) |
| BIDS | Krzysztof Gorgolewski | 2016 | OHBM | Geneva, Switzerland | n/a | [link](https://www.slideshare.net/chrisfilo1/the-brain-imaging-data-structure-ohbm-2016) |

<!-- TEMPLATE -->
<!-- | Title | Speaker | Year | Occasion | Location | [link](video) | [link](slides) | -->
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4 changes: 2 additions & 2 deletions docs/getting_started/tutorials/annotation.md
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Expand Up @@ -26,13 +26,13 @@ Annotations in BIDS can be done at several levels, including the dataset, subjec
funding, and citation information.
This file does not provide any actual description of the data.

> You can fill in this blank [dataset description template](https://raw.githubusercontent.com/bids-standard/bids-starter-kit/main/templates/dataset_description.json) or use it as a guide.
> You can fill in this blank [dataset description template](../templates/index.md#dataset_descriptionjson) or use it as a guide.
### Dataset description (`README`)
`README` file is a top-level text file that gives the actual overview of the dataset.
A comprehensive `README` is essential for users of your data.

> You can edit the [README template](https://raw.githubusercontent.com/bids-standard/bids-starter-kit/main/templates/README.MD) with the vital information needed for others to analyze your dataset.
> You can edit the [README template](../templates/index.md#readmemd) with the vital information needed for others to analyze your dataset.
## Subject annotations
Annotations at the subject level can be done in the `participants.tsv` file,
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4 changes: 3 additions & 1 deletion md_link_check_config.json
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Expand Up @@ -14,8 +14,10 @@
},
{
"pattern": "^https://www.instagram.com/bidsstandard.*"
},
{
"pattern": "^https://direct.mit.edu/imag/pages/editorial-info"
}

],
"timeout": "20s",
"retryOn429": true
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