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update openneuro
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Remi-Gau committed Dec 12, 2024
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2 changes: 1 addition & 1 deletion docs/blog/posts/meet-the-bids-steering-group.md
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Expand Up @@ -126,7 +126,7 @@ Furthermore, I hope that we can extend BIDS with more raw data types, like eye-t

I am a professor of psychology at Stanford.
My main basic research interests are focused on the brain systems involved in decision making and executive function, primarily using fMRI.
In the last decade I've become increasingly interested in meta-scientific topics focused on reproducibility and transparency, including involvement in a number of data sharing initiatives including [OpenNeuro](https://openneuro.org/), [NeuroVault](https://neurovault.org/), and [NeuroSynth](https://neurosynth.org/).
In the last decade I've become increasingly interested in meta-scientific topics focused on reproducibility and transparency, including involvement in a number of data sharing initiatives including [OpenNeuro][openneuro], [NeuroVault](https://neurovault.org/), and [NeuroSynth](https://neurosynth.org/).

#### How did you get involved in BIDS?

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2 changes: 1 addition & 1 deletion docs/collaboration/governance.md
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Expand Up @@ -62,7 +62,7 @@ Python and [bids-matlab](https://github.com/bids-standard/bids-matlab)
libraries allow querying and manipulating BIDS-compliant datasets,
[BIDS-Apps](https://bids-website.readthedocs.io/en/latest/tools/bids-apps.html) for running portable
pipelines on validated BIDS datasets, and platforms like
[OpenNeuro](https://openneuro.org/) store and serve BIDS datasets. Note
[OpenNeuro][openneuro] store and serve BIDS datasets. Note
that the associated software does not fall under the same governance
structure as BIDS, although the contributor and user base may largely
overlap.
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2 changes: 1 addition & 1 deletion docs/datasets/index.md
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Expand Up @@ -9,7 +9,7 @@ Many public repositories for neuroimaging data are accepting (and in some cases
data submitted in BIDS format. Below is a small sample of some main resources for finding
BIDS datasets that may be used in your analyses.

[OpenNeuro](https://openneuro.org/):
[OpenNeuro][openneuro]:
If you're looking for full data files to run the validator on or simply compare to your
own _bidsified_ data try searching here. Datasets here are (by and large) publicly available and conform to BIDS.

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2 changes: 1 addition & 1 deletion docs/faq/general.md
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Expand Up @@ -180,5 +180,5 @@ If you want to know more about what license to choose for your dataset,
see the [turing way](https://the-turing-way.netlify.app/reproducible-research/licensing/licensing-data.html#data-licenses)
page dedicated to this topic.

If you plan to put your dataset on [openneuro](https://openneuro.org/),
If you plan to put your dataset on [openneuro][openneuro],
you should use a CC0 or a PDDL license as explained in their [FAQ](https://openneuro.org/faq).
2 changes: 1 addition & 1 deletion docs/impact/measuring.md
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Expand Up @@ -6,7 +6,7 @@ Over the years, the number of shared datasets available to the public has
greatly increased. At its heart, adoption of the BIDS standard across datasets
aids in the sharing of data and collaboration of research through the standardization
of descriptive files names and the organization of data. BIDS organized datasets are
available through public repositories such as [Openneuro.org](https://openneuro.org/)
available through public repositories such as [Openneuro.org][openneuro]
and the number of publicly available BIDS datasets continues to grow every year.

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4 changes: 2 additions & 2 deletions docs/index.md
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Expand Up @@ -15,7 +15,7 @@ we describe a simple and easy to adopt way of organizing neuroimaging and behavi
![BIDS-folder-organization](./assets/img/dicom-reorganization-transparent-white_1000x477.png#only-dark)

BIDS was heavily inspired by the format used internally by the OpenfMRI repository
that is now known as [OpenNeuro](https://openneuro.org).
that is now known as [OpenNeuro][openneuro].
While working on BIDS we consulted many neuroscientists to make sure it covers most common experiments,
but at the same time is intuitive and easy to adopt.
The specification is intentionally based on simple file formats and folder structures
Expand Down Expand Up @@ -46,7 +46,7 @@ the [starter kit](./getting_started/index.md) with a simple explanation how to w
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the [BIDS validator](https://github.com/bids-standard/bids-validator) to automatically check datasets for adherence to the specification,
[BIDS Apps](https://doi.org/10.1371/journal.pcbi.1005209), a collection of portable neuroimaging pipelines that understand BIDS datasets,
and [OpenNeuro](https://openneuro.org/) as a database for BIDS formatted datasets.
and [OpenNeuro][openneuro] as a database for BIDS formatted datasets.

A non-exhaustive list of further tools can be found in the [tools](./tools/index.md) section.

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