Releases: bids-standard/bids-validator
Releases · bids-standard/bids-validator
v1.14.12
v1.14.11
What's Changed
- fix: Load schema with fetch, default to JSR package by @effigies in #2112
- build: Include exports for extending validator in JSR packaging by @nellh in #2114
- chore: Import schema and base types from @bids/schema/. by @effigies in #2115
- chore(ci): Ignore MRS examples for legacy validator by @effigies in #2117
- feat: Validate CITATION.cff by @rwblair in #2116
- bump schema package version by @rwblair in #2120
Full Changelog: v1.14.10...v1.14.11
v1.14.10
What's Changed
- rf: Rewrite readEntities to give more intuitive results by @effigies in #2063
- feat: I/O checks for NIfTI and JSON files by @effigies in #2056
- feat: Prune derivatives from main file tree by @effigies in #2065
- feat(cli): Detect color support, respect flags and environment variables by @effigies in #2068
- feat(legacy): Support local BIDS-URIs for IntendedFor fields by @effigies in #2069
- rf(context): Move file tree, schema, and issues into context.dataset by @effigies in #2066
- feat: Treat directory formats like other data files by @effigies in #2064
- 'schema.rules.rules'.... booo by @rwblair in #2070
- feat: Track files referenced by other files to identify orphans by @effigies in #2057
- chore: Add .editorconfig by @effigies in #2072
- Refactor DatasetIssues and Issue classes by @rwblair in #2067
- fix(nifti): Suppress console.error during NIfTI readHeader() by @effigies in #2076
- feat: Separate output issues by subcodes by @rwblair in #2078
- fix(json): Validate all JSON fields by @effigies in #2075
- test: Add unit tests for valid and invalid filenames by @effigies in #2079
- Throw error on multiple valid inheritable files in the same directory... by @rwblair in #2080
- chore(pkg): Prepare package for publication to jsr by @effigies in #2077
- fix: Add --color options only when run through command line by @effigies in #2086
- chore: Various cleanups by @effigies in #2085
- feat: Utilities for constructing BIDSFiles and FileTrees by @effigies in #2082
- fix(web): Generate web UI elements from new issues by @effigies in #2088
- feat: Add FileTree.get method by @effigies in #2083
- feat: Do not warn on overridden columns if meaning is unchanged by @effigies in #2084
- [js] Update all npm dependencies (2024-08-18) by @depfu in #2094
- chore(deps): bump axios from 1.7.3 to 1.7.4 by @dependabot in #2096
- rf: Use upstream context types by @effigies in #2090
- feat: Parse gzip header by @effigies in #2092
- feat: Hack around missing round() function by @effigies in #2099
- feat(cli): Add --blacklistModalities and --ignoreWarnings flags by @effigies in #2098
- feat: Parse (OME-)TIFF by @effigies in #2093
- fix: Use logger, not console, to log errors by @effigies in #2103
- feat(cli): Add configuration file by @effigies in #2100
- Add flag for validating derivatives inside /derivatives/ by @rwblair in #2102
- feat(tsv): Warn on undefined columns by @effigies in #2104
- fix: Use @libs/xml over xml2js for tiff parsing by @nellh in #2106
- [js] Update all npm dependencies (2024-08-25) by @depfu in #2109
- chore(deps): bump micromatch from 4.0.5 to 4.0.8 by @dependabot in #2110
- fix: Import schema correctly from JSR by @effigies in #2111
Full Changelog: v1.14.8...v1.14.10
v1.14.8
What's Changed
- feat: Add
exists(..., 'file')
for file-relative paths by @effigies in #2054 - Purge Python validator by @effigies in #2062
- Bump hed-validator to v3.15.4 by @happy5214 in #2061
- ci: Include legacy validator build in deno web deployment by @nellh in #2060
Full Changelog: v1.14.7...v1.14.8
v1.14.7
What's Changed
- [js] Update all npm dependencies (2024-05-12) by @depfu in #1971
- [js] Update all npm dependencies (2024-05-19) by @depfu in #1972
- ci: Fix artifact name for schema web validator deployment by @nellh in #1970
- FIX: Expect multiple rule matches for events.json by @effigies in #1952
- feat: Add values to associations.bvals, fix misnamed variables by @effigies in #1955
- ENH: Validate phenotype filenames by @effigies in #1957
- Resolve remaining test failures for schema validator by @effigies in #1958
- feat(py): Base Python validator on schema instead of hard-coded regexes by @effigies in #1967
- chore(codespell): particpants ==> participants by @effigies in #1976
- chore(deps): bump tar and lerna by @dependabot in #1975
- feat(schema): Load subject data by @effigies in #1977
- [js] Update all npm dependencies (2024-05-26) by @depfu in #1980
- feat(schema): Add issue for missing dataset_description.json by @effigies in #1982
- chore(deps): bump bids-validator/spec from
0950f6d
to70d7750
by @dependabot in #1983 - Bump hed-validator to 3.14.0 by @happy5214 in #1986
- (deno) TSV type check overhaul. by @rwblair in #1987
- [js] Update all npm dependencies (2024-06-09) by @depfu in #1991
- fix: OSX and Windows tests by @effigies in #1989
- fix(expr): Use a sensible sorting function for sorted() by @effigies in #1990
- fix: Small cleanups from recent test fixes by @effigies in #1992
- feat(deno): Retrieve version from import.meta.url or git, when possible by @effigies in #1985
- Provide safe.directory=* for git describe to prevent git freaking out by @yarikoptic in #1996
- chore(ci): Tag deno builds with full version, truncate history by @effigies in #1993
- feat(tsv): Accept column definitions in schema entries by @effigies in #2003
- chore(deps): bump braces from 3.0.2 to 3.0.3 by @dependabot in #2002
- [js] Update all npm dependencies (2024-06-16) by @depfu in #2004
- Add support for the XPCT suffix in microscopy by @chourroutm in #1973
- fix(legacy): Prevent prototype pollution (global property) from crashing sidecar merges by @nellh in #2015
- fix(legacy): Combine sidecars with a method resilient to Object namespace pollution by @effigies in #2016
- Completely rewrite HED support by @happy5214 in #2014
- chore(deps-dev): bump ws from 8.13.0 to 8.17.1 by @dependabot in #2005
- chore(deps): bump docker/build-push-action from 5 to 6 by @dependabot in #2011
- [js] Update all npm dependencies (2024-07-11) by @depfu in #2009
- Improve test coverage for code added in #2014 by @happy5214 in #2018
- [js] Update all npm dependencies (2024-07-21) by @depfu in #2023
- [js] Update all npm dependencies (2024-07-28) by @depfu in #2024
- chore:
deno fmt
schema validator by @effigies in #2026 - feat(expr): Allow sorted to take a method argument, enabling numeric and lexical sorting by @effigies in #2022
- feat(json): Warn on missing RECOMMENDED metadata by @effigies in #2027
- fix(tsv): Check explicit formats for column contents when defined by @effigies in #2025
- fix(context): Find sidecars when directories share prefixes by @effigies in #2028
- fix(summary): Verify context.json is an object before looking up keys by @effigies in #2029
- fix(context): Add file size to context, fixes README_FILE_SMALL by @effigies in #2030
- Generate JSON schema's from spec schema to validate values in sidecars. by @rwblair in #2020
- fix(web): Use JSON.stringify when Deno.inspect is unavailable by @effigies in #2032
- Bump hed-validator to v3.15.2 by @happy5214 in #2034
- rf(context): Refactor inheritance principle to walk from leaf to root by @effigies in #2035
- fix(nifti): Load NIfTI headers by @effigies in #2036
- rf(json-schema): Factor JSON schema validation out of context.dataset by @effigies in #2033
- feat(eval): Distinguish JSON rules from sidecar rules by @effigies in #2031
- fix(expr): Coerce arguments to min/max to numbers by @effigies in #2038
- feat(context): Detect duplicate columns when parsing TSV files by @effigies in #2039
- Bump hed-validator to v3.15.3 by @happy5214 in #2041
- hack: Censor ".parent" fields which can lead to circular references by @effigies in #2040
- HED Validator integration into bids schema based validator. by @rwblair in #1648
- fix(expr): Escape backslashes in checks before interpolating by @effigies in #2042
- chore(deps): bump bids-validator/tests/data/bids-examples from
401f4cf
toad9db4b
by @dependabot in #2045 - chore(deps): bump bids-validator/spec from
9f2a7a8
tofdca7ec
by @dependabot in #2046 - 🚨 [security] [js] Update @aws-sdk/client-s3 3.614.0 → 3.621.0 (minor) by @depfu in #2047
- feat(tsv): Memoize TSV loading with a tiered cache, deleting after leaving a directory by @effigies in #2052
- fix(channels): Add needed fields to context.associations.channels by @effigies in #2051
- fix(bvec): Improve empty row detection, stop preemptive numeric conversion by @effigies in #2053
- Cross reference local and schema issue codes by @rwblair in #2048
- [js] Update all npm dependencies (2024-08-04) by @depfu in #2055
New Contributors
- @chourroutm made their first contribution in #1973
Full Changelog: v1.14.6...v1.14.7
v1.14.6
What's Changed
- chore: Remove schema experiment from legacy validator by @nellh in #1932
- fix(schema): Fix relative import path "ignore" not prefixed error for standalone builds by @nellh in #1936
- fix: Preserve key properties when using spread to copy BIDSFile objects in browser environments by @nellh in #1928
- FIX: Load JSON contents into context eagerly by @effigies in #1938
- have exists return false on bids-uri check if string doesn't start with 'bids:' by @rwblair in #1941
- fix: Set deno validator exit code on errors by @nellh in #1944
- Pass on multiple rules.files matches from filenameIdentify to filenameValidate. by @rwblair in #1940
- Have filenameIdentify use datasetContext to determine which filename rules to use. by @rwblair in #1939
- ci: Replace web validator with schema version and link to subdirectory build of the legacy validator by @nellh in #1929
- Fix exists for derivative paths in raw datasets. by @rwblair in #1950
- Use /usr/bin/env not /bin/env as a more portable (present on OSX) by @yarikoptic in #1960
- fix(expressions): Make FileTree.contains() return true for directories by @effigies in #1956
- FIX: Start file count at 0 by @effigies in #1951
- CI: Update submodules in the usual way by @effigies in #1965
- feat(legacy): Check for required fields in PET sidecars. by @nellh in #1964
- chore(deps): bump bids-validator/spec from
bd08602
to0950f6d
by @dependabot in #1961 - fix(legacy): Add missing top-level rule for UNIT1 sidecars by @bpinsard in #1966
- [js] Update all npm dependencies (2024-05-07) by @depfu in #1919
- [js] Update hed-validator 3.13.4 → 3.13.5 (patch) by @depfu in #1968
- chore(deps): bump ejs from 3.1.9 to 3.1.10 by @dependabot in #1962
New Contributors
Full Changelog: v1.14.5...v1.14.6
v1.14.5
What's Changed
- [js] Update all npm dependencies (2024-03-17) by @depfu in #1917
- chore(deps): bump follow-redirects from 1.15.5 to 1.15.6 by @dependabot in #1916
- Add vite web validator for the schema validator by @nellh in #1915
- chore(deps): bump bids-validator/tests/data/bids-examples from
0d60f73
to711be5b
by @dependabot in #1921 - chore(deps): bump bids-validator/spec from
5b835b0
tobd08602
by @dependabot in #1922 - FIX: Add minimum Python requirement to package metadata by @effigies in #1924
Full Changelog: v1.14.4...v1.14.5
v1.14.4
What's Changed
- Bump hed-validator dependency to v3.13.4 by @happy5214 in #1913
Full Changelog: v1.14.3...v1.14.4
v1.14.3
v1.14.2
What's Changed
- Use generic TSV file class from hed-validator package by @happy5214 in #1898
- [js] Update all npm dependencies (2024-02-25) by @depfu in #1899
- fix(dep): Handle deprecations in deno>=0.214.0 by @effigies in #1902
- [js] Update all npm dependencies (2024-03-03) by @depfu in #1905
- chore(deps): bump bids-validator/tests/data/bids-examples from
eff47f1
to0d60f73
by @dependabot in #1903 - chore(deps): bump bids-validator/spec from
dc49ee2
to5b835b0
by @dependabot in #1904
Full Changelog: v1.14.1...v1.14.2