chore: deno fmt

src/files/dwi.test.ts

@@ -4,7 +4,7 @@ import { parseBvalBvec } from './dwi.ts'
 
 Deno.test('Test bval/bvec parsing', async (t) => {
   await t.step('Load 3 bvals', async () => {
-    const bvals = parseBvalBvec('0 1 2 \n')  // Typically ends with " \n"
+    const bvals = parseBvalBvec('0 1 2 \n') // Typically ends with " \n"
     assertEquals(bvals, [['0', '1', '2']])
   })
   await t.step('Load 3 bvals - missing newline', async () => {
@@ -32,4 +32,3 @@ Deno.test('Test bval/bvec parsing', async (t) => {
     assertEquals(bvecs, [['0', '1', '2'], ['0', '1', '2'], ['0', '1', '2']])
   })
 })
-

src/issues/datasetIssues.ts

@@ -1,6 +1,6 @@
 import { nonSchemaIssues } from './list.ts'
-import type { Issue, Severity, IssueDefinition, IssueFile } from '../types/issues.ts'
-export type { Issue, Severity, IssueDefinition, IssueFile }
+import type { Issue, IssueDefinition, IssueFile, Severity } from '../types/issues.ts'
+export type { Issue, IssueDefinition, IssueFile, Severity }
 
 // Code is deprecated, return something unusual but JSON serializable
 const CODE_DEPRECATED = Number.MIN_SAFE_INTEGER

src/issues/list.ts

@@ -168,14 +168,13 @@ export const bidsIssues: IssueDefinitionRecord = {
   },
   CITATION_CFF_VALIDATION_ERROR: {
     severity: 'error',
-    reason: 
-      "The file does not pass validation using the citation.cff standard's schema." +
-      'https://github.com/citation-file-format/citation-file-format/blob/main/schema-guide.md'
+    reason: "The file does not pass validation using the citation.cff standard's schema." +
+      'https://github.com/citation-file-format/citation-file-format/blob/main/schema-guide.md',
   },
   FILE_READ: {
     severity: 'error',
-    reason: 'We were unable to read this file.'
-  }
+    reason: 'We were unable to read this file.',
+  },
 }
 
 const hedIssues: IssueDefinitionRecord = {

src/main.ts

@@ -28,9 +28,9 @@ export async function main(): Promise<ValidationResult> {
   // Run the schema based validator
   const schemaResult = await validate(tree, options, config)
 
-  let output_string = ""
+  let output_string = ''
   if (options.json) {
-      output_string = resultToJSONStr(schemaResult)
+    output_string = resultToJSONStr(schemaResult)
   } else {
     output_string = consoleFormat(schemaResult, {
       verbose: options.verbose ? options.verbose : false,
@@ -41,7 +41,7 @@ export async function main(): Promise<ValidationResult> {
     if (globalThis.Deno) {
       Deno.writeTextFileSync(options.outfile, output_string)
     } else {
-      console.error("Output to file only supported in Deno runtime")
+      console.error('Output to file only supported in Deno runtime')
       console.log(output_string)
     }
   } else {

src/schema/associations.ts

@@ -163,7 +163,10 @@ export async function buildAssociations(
     try {
       file = walkBack(source, inherit, extensions, suffix).next().value
     } catch (error) {
-      if (error && typeof error === 'object' && 'code' in error && error.code === 'MULTIPLE_INHERITABLE_FILES') {
+      if (
+        error && typeof error === 'object' && 'code' in error &&
+        error.code === 'MULTIPLE_INHERITABLE_FILES'
+      ) {
         // @ts-expect-error
         issues.add(error)
         break

src/schema/context.ts

@@ -184,7 +184,10 @@ export class BIDSContext implements Context {
     try {
       sidecars = [...walkBack(this.file)]
     } catch (error) {
-      if (error && typeof error === 'object' && 'code' in error && error.code === 'MULTIPLE_INHERITABLE_FILES') {
+      if (
+        error && typeof error === 'object' && 'code' in error &&
+        error.code === 'MULTIPLE_INHERITABLE_FILES'
+      ) {
         // @ts-expect-error
         this.dataset.issues.add(error)
       } else {

src/setup/options.ts

@@ -32,7 +32,7 @@ export type ValidatorOptions = {
 }
 
 const modalityType = new EnumType<string>(
-  Object.keys(schema.rules.modalities)
+  Object.keys(schema.rules.modalities),
 )
 
 /** Extendable Cliffy Command with built in BIDS validator options */

src/version.ts

@@ -34,14 +34,14 @@ export async function getVersion(): Promise<string> {
 async function getLocalVersion(path: string): Promise<string> {
   // safe.directory setting so we could still operate from another user
   try {
-    const command = new Deno.Command("git", {
+    const command = new Deno.Command('git', {
       args: ['-C', path, '-c', 'safe.directory=*', 'describe', '--tags', '--always'],
     })
-    const { success, stdout } = await command.output();
+    const { success, stdout } = await command.output()
     const description = new TextDecoder().decode(stdout).trim()
     return description
-  } catch(err) {
-    return ""
+  } catch (err) {
+    return ''
   }
 }