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[ENH] Do explicitly "allow" for having dotfiles and explicitly ignore them #1992

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Dec 18, 2024
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[ENH] Do explicitly "allow" for having dotfiles and explicitly ignore them #1992

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5 changes: 5 additions & 0 deletions src/common-principles.md
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Expand Up @@ -202,6 +202,11 @@ as the labels would collide on a case-insensitive filesystem.
Additionally, because the suffix `eeg` is defined,
then the suffix `EEG` will not be added to future versions of the standard.

### Dotfiles

Files and directories starting with a dot (`.`) are reserved for system use and no valid recognized BIDS file or directory can start with a `.`.
Any file or directory starting with a `.` present in a BIDS dataset is considered hidden and not subject to BIDS validation.

## Uniqueness of data files

Data files MUST be uniquely identified by BIDS path components
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4 changes: 3 additions & 1 deletion tools/schemacode/src/bidsschematools/__main__.py
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Expand Up @@ -169,7 +169,9 @@ def pre_receive_hook(schema, input_, output):
logger.debug("Validating files, first file: %s", filename)
any_files = True
filename = filename.strip()
if any(_bidsignore_check(pattern, filename, "") for pattern in ignore):
if filename.startswith(".") or any(
_bidsignore_check(pattern, filename, "") for pattern in ignore
):
continue
if not any(re.match(regex, filename) for regex in regexes):
print(filename, file=output)
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