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[ENH] Use deidentification consistently in place of anonymization #1799

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DimitriPapadopoulos
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@DimitriPapadopoulos DimitriPapadopoulos commented Apr 22, 2024

In the vast majority of cases, strict anonymisation is impossible. Use the more generic term deidentification instead.

I suggest #1769 is merged first, then I can rebase and fix all occurrences.

Fixes #1782.

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#1769 merged.

src/CHANGES.md Outdated
@@ -375,7 +375,7 @@
- \[MISC] Typo and style [#378](https://github.com/bids-standard/bids-specification/pull/378) ([TheChymera](https://github.com/TheChymera))
- \[FIX] divide readme into 3 parts [#374](https://github.com/bids-standard/bids-specification/pull/374) ([sappelhoff](https://github.com/sappelhoff))
- \[FIX] Refer to BIDS consistently, instead of "\<Modality>-BIDS" [#366](https://github.com/bids-standard/bids-specification/pull/366) ([sappelhoff](https://github.com/sappelhoff))
- \[FIX] Change recommended anonymization date from 1900 to 1925 [#363](https://github.com/bids-standard/bids-specification/pull/363) ([alexrockhill](https://github.com/alexrockhill))
- \[FIX] Change recommended deidentification date from 1900 to 1925 [#363](https://github.com/bids-standard/bids-specification/pull/363) ([alexrockhill](https://github.com/alexrockhill))
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We should not modify CHANGES.md. If there's a typo in a PR, we can edit the PR and it will get updated next time the changelog generator is run. In this case, I think it's okay to leave, since it accurately describes the PR.

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PR #363 is precisely about deidentififcation, not anonymisation - shifting dates so that "chances of identifying a person based on the date and time of their scan would be decreased". I have actually modified the paragraph modified by #363:

Examples include anonymization or defacing of the data, or

With that said, perhaps it is not worth chasing down this occurrence of anonymisation.

@DimitriPapadopoulos DimitriPapadopoulos force-pushed the anonymisation_deidentification branch from 1febb47 to 2faf00b Compare April 22, 2024 15:26
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codecov bot commented Apr 22, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 87.92%. Comparing base (01025da) to head (fcfcb37).

Additional details and impacted files
@@           Coverage Diff           @@
##           master    #1799   +/-   ##
=======================================
  Coverage   87.92%   87.92%           
=======================================
  Files          16       16           
  Lines        1375     1375           
=======================================
  Hits         1209     1209           
  Misses        166      166           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@DimitriPapadopoulos DimitriPapadopoulos force-pushed the anonymisation_deidentification branch from 2faf00b to e9db606 Compare April 22, 2024 15:35
@DimitriPapadopoulos DimitriPapadopoulos marked this pull request as draft April 22, 2024 15:36
In the vast majority of cases, strict anonymisation is impossible.
Use the more generic term deidentification instead.
@DimitriPapadopoulos DimitriPapadopoulos force-pushed the anonymisation_deidentification branch from e9db606 to fcfcb37 Compare April 22, 2024 15:42
@DimitriPapadopoulos DimitriPapadopoulos marked this pull request as ready for review April 22, 2024 15:44
@effigies effigies changed the title anonymisation → deidentification [ENH] Use deidentification consistently in place of anonymization Apr 22, 2024
@Remi-Gau Remi-Gau merged commit 0950f6d into bids-standard:master Apr 30, 2024
26 checks passed
@DimitriPapadopoulos DimitriPapadopoulos deleted the anonymisation_deidentification branch April 30, 2024 14:23
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anonymization → deidentififcation (or pseudonymization)
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