[DATALAD RUNCMD] Replace mentionings of rules/datatypes with rules/files/raw

src/appendices/file-collections.md

@@ -25,7 +25,7 @@ included in this appendix:
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -60,7 +60,7 @@ and a guide for using macros can be found at
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->

src/appendices/qmri.md

@@ -196,7 +196,7 @@ Explanation of the table:
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->

src/modality-specific-files/behavioral-experiments.md

@@ -3,7 +3,7 @@
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->

src/modality-specific-files/electroencephalography.md

@@ -15,7 +15,7 @@ and can be used for practical guidance when curating a new dataset.
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -184,7 +184,7 @@ Date time information MUST be expressed as indicated in [Units](../common-princi
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -263,7 +263,7 @@ UADC001  MISC  n/a    envelope of audio signal        n/a           good    n/a
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -310,7 +310,7 @@ the recording.
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -428,7 +428,7 @@ Photos of the anatomical landmarks and/or fiducials.
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->

src/modality-specific-files/intracranial-electroencephalography.md

@@ -15,7 +15,7 @@ and can be used for practical guidance when curating a new dataset.
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -204,7 +204,7 @@ Date time information MUST be expressed as indicated in [Units](../common-princi
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -281,7 +281,7 @@ TR1   TRIG  n/a   n/a         n/a         good    n/a
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -355,7 +355,7 @@ H01   27  -42  -21  5      AdTech
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -435,7 +435,7 @@ data.
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->

src/modality-specific-files/magnetic-resonance-imaging-data.md

@@ -168,7 +168,7 @@ whenever possible. See also
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -179,7 +179,7 @@ Currently supported non-parametric structural MR images include:
 <!--
 This block generates a suffix table.
 The definitions of these fields can be found in
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -284,7 +284,7 @@ constitute parametric maps. Currently supported parametric maps include:
 <!--
 This block generates a suffix table.
 The definitions of these fields can be found in
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -336,7 +336,7 @@ datasets (created after version 1.5.0.):
 <!--
 This block generates a suffix table.
 The definitions of these fields can be found in
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -356,7 +356,7 @@ Currently supported image contrasts include:
 <!--
 This block generates a suffix table.
 The definitions of these fields can be found in
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -372,7 +372,7 @@ and a guide for using macros can be found at
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -565,7 +565,7 @@ Currently supported image types include:
 <!--
 This block generates a suffix table.
 The definitions of these fields can be found in
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -580,7 +580,7 @@ and a guide for using macros can be found at
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -790,7 +790,7 @@ and can be used for practical guidance when curating a new dataset.
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -947,7 +947,7 @@ using the following image types:
 <!--
 This block generates a suffix table.
 The definitions of these fields can be found in
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -1022,7 +1022,7 @@ containing that type of fieldmap can be found here:
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -1068,7 +1068,7 @@ second echos are available.
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -1104,7 +1104,7 @@ In some cases (for example GE), the scanner software will directly reconstruct a
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -1153,7 +1153,7 @@ AFNI `3dqwarp`.
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->

src/modality-specific-files/magnetoencephalography.md

@@ -19,7 +19,7 @@ the [BIDS examples repository](https://github.com/bids-standard/bids-examples).
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -204,7 +204,7 @@ Date time information MUST be expressed as indicated in [Units](../common-princi
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -286,7 +286,7 @@ UADC001 AUDIO V envelope of audio signal presented to participant
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -399,7 +399,7 @@ Photos of the anatomical landmarks and/or head localization coils
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -428,7 +428,7 @@ actual anatomical nasion: `sub-0001_ses-001_acq-NAS_photo.jpg`
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->

src/modality-specific-files/microscopy.md

@@ -21,7 +21,7 @@ Further Microscopy datasets are available:
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -66,7 +66,7 @@ Microscopy data currently support the following imaging modalities:
 <!--
 This block generates a suffix table.
 The definitions of these fields can be found in
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -434,7 +434,7 @@ in a sample.
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->

src/modality-specific-files/positron-emission-tomography.md

@@ -63,7 +63,7 @@ In this example, tracer injection coincides with scan start.
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->
@@ -297,7 +297,7 @@ ses-02 59
 <!--
 This block generates a filename templates.
 The inputs for this macro can be found in the directory
-  src/schema/rules/datatypes
+  src/schema/rules/files/raw
 and a guide for using macros can be found at
  https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
 -->

src/schema/objects/datatypes.yaml

@@ -1,6 +1,6 @@
 ---
 # This file defines valid BIDS datatypes, along with their full names and descriptions.
-# For rules regarding how suffixes relate to datatypes, see files in `rules/datatypes/`.
+# For rules regarding how suffixes relate to datatypes, see files in `rules/files/raw/`.
 anat:
   value: anat
   display_name: Anatomical Magnetic Resonance Imaging

src/schema/objects/suffixes.yaml

@@ -1,6 +1,6 @@
 ---
 # This file defines valid BIDS file suffixes.
-# For rules regarding how suffixes relate to datatypes, see files in `rules/datatypes/`.
+# For rules regarding how suffixes relate to datatypes, see files in `rules/files/raw/`.
 TwoPE:
   value: 2PE
   display_name: 2-photon excitation microscopy