Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[SCHEMA] Reorganize raw dataset rules #1241

Closed
wants to merge 2 commits into from
Closed

[SCHEMA] Reorganize raw dataset rules #1241

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
949441f
put raw rules files in a raw directory where applicable
rwblair Aug 19, 2022
cebe510
update derivatives $refs
rwblair Aug 19, 2022
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
0 .../rules/common_derivatives_validation.yaml → ...atives/common_derivatives_validation.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/checks/asl.yaml → src/schema/rules/checks/raw/asl.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/checks/dwi.yaml → src/schema/rules/checks/raw/dwi.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/checks/events.yaml → src/schema/rules/checks/raw/events.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/checks/fmap.yaml → src/schema/rules/checks/raw/fmap.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/checks/func.yaml → src/schema/rules/checks/raw/func.yaml
View file
Open in desktop
File renamed without changes.
236 changes: 118 additions & 118 deletions src/schema/rules/datatypes/derivatives/common_derivatives.yaml
View file
Open in desktop

Large diffs are not rendered by default.

72 changes: 36 additions & 36 deletions src/schema/rules/datatypes/derivatives/common_imaging_derivatives.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,228 +1,228 @@
---
anat_parametric_volumetric:
$ref: rules.datatypes.anat.parametric
$ref: rules.datatypes.raw.anat.parametric
entities:
$ref: rules.datatypes.anat.parametric.entities
$ref: rules.datatypes.raw.anat.parametric.entities
space: optional
resolution: optional
density: optional
description: optional

anat_nonparametric_volumetric:
$ref: rules.datatypes.anat.nonparametric
$ref: rules.datatypes.raw.anat.nonparametric
entities:
$ref: rules.datatypes.anat.nonparametric.entities
$ref: rules.datatypes.raw.anat.nonparametric.entities
space: optional
resolution: optional
density: optional
description: optional

dwi_volumetric:
$ref: rules.datatypes.dwi.dwi
$ref: rules.datatypes.raw.dwi.dwi
entities:
$ref: rules.datatypes.dwi.dwi.entities
$ref: rules.datatypes.raw.dwi.dwi.entities
space: optional
resolution: optional
density: optional
description: optional

func_volumetric:
$ref: rules.datatypes.func.func
$ref: rules.datatypes.raw.func.func
entities:
$ref: rules.datatypes.func.func.entities
$ref: rules.datatypes.raw.func.func.entities
space: optional
resolution: optional
density: optional
description: optional

anat_parametric_mask:
$ref: rules.datatypes.anat.parametric
$ref: rules.datatypes.raw.anat.parametric
suffixes:
- mask
extensions:
- .nii.gz
entities:
$ref: rules.datatypes.anat.parametric.entities
$ref: rules.datatypes.raw.anat.parametric.entities
space: optional
resolution: optional
density: optional
label: optional
description: optional

anat_nonparametric_mask:
$ref: rules.datatypes.anat.nonparametric
$ref: rules.datatypes.raw.anat.nonparametric
suffixes:
- mask
extensions:
- .nii.gz
entities:
$ref: rules.datatypes.anat.nonparametric.entities
$ref: rules.datatypes.raw.anat.nonparametric.entities
space: optional
resolution: optional
density: optional
label: optional
description: optional

dwi_mask:
$ref: rules.datatypes.dwi.dwi
$ref: rules.datatypes.raw.dwi.dwi
suffixes:
- mask
extensions:
- .nii.gz
entities:
$ref: rules.datatypes.dwi.dwi.entities
$ref: rules.datatypes.raw.dwi.dwi.entities
space: optional
resolution: optional
density: optional
label: optional
description: optional

func_mask:
$ref: rules.datatypes.func.func
$ref: rules.datatypes.raw.func.func
suffixes:
- mask
extensions:
- .nii.gz
entities:
$ref: rules.datatypes.func.func.entities
$ref: rules.datatypes.raw.func.func.entities
space: optional
resolution: optional
density: optional
label: optional
description: optional

anat_parametric_discrete_segmentation:
$ref: rules.datatypes.anat.parametric
$ref: rules.datatypes.raw.anat.parametric
suffixes:
- dseg
extensions:
- .nii.gz
entities:
$ref: rules.datatypes.anat.parametric.entities
$ref: rules.datatypes.raw.anat.parametric.entities
space: optional
resolution: optional
density: optional
description: optional

anat_nonparametric_discrete_segmentation:
$ref: rules.datatypes.anat.nonparametric
$ref: rules.datatypes.raw.anat.nonparametric
suffixes:
- dseg
extensions:
- .nii.gz
entities:
$ref: rules.datatypes.anat.nonparametric.entities
$ref: rules.datatypes.raw.anat.nonparametric.entities
space: optional
resolution: optional
density: optional
description: optional

func_discrete_segmentation:
$ref: rules.datatypes.func.func
$ref: rules.datatypes.raw.func.func
suffixes:
- dseg
extensions:
- .nii.gz
entities:
$ref: rules.datatypes.func.func.entities
$ref: rules.datatypes.raw.func.func.entities
space: optional
resolution: optional
density: optional
description: optional

dwi_discrete_segmentation:
$ref: rules.datatypes.dwi.dwi
$ref: rules.datatypes.raw.dwi.dwi
suffixes:
- dseg
extensions:
- .nii.gz
entities:
$ref: rules.datatypes.dwi.dwi.entities
$ref: rules.datatypes.raw.dwi.dwi.entities
space: optional
resolution: optional
density: optional
description: optional

anat_parametric_probabilistic_segmentation:
$ref: rules.datatypes.anat.parametric
$ref: rules.datatypes.raw.anat.parametric
suffixes:
- probseg
extensions:
- .nii.gz
entities:
$ref: rules.datatypes.anat.parametric.entities
$ref: rules.datatypes.raw.anat.parametric.entities
space: optional
resolution: optional
density: optional
label: optional
description: optional

anat_nonparametric_probabilistic_segmentation:
$ref: rules.datatypes.anat.nonparametric
$ref: rules.datatypes.raw.anat.nonparametric
suffixes:
- probseg
extensions:
- .nii.gz
entities:
$ref: rules.datatypes.anat.nonparametric.entities
$ref: rules.datatypes.raw.anat.nonparametric.entities
space: optional
resolution: optional
density: optional
label: optional
description: optional

func_probabilistic_segmentation:
$ref: rules.datatypes.func.func
$ref: rules.datatypes.raw.func.func
suffixes:
- probseg
extensions:
- .nii.gz
entities:
$ref: rules.datatypes.func.func.entities
$ref: rules.datatypes.raw.func.func.entities
space: optional
resolution: optional
density: optional
label: optional
description: optional

dwi_probabilistic_segmentation:
$ref: rules.datatypes.dwi.dwi
$ref: rules.datatypes.raw.dwi.dwi
suffixes:
- probseg
extensions:
- .nii.gz
entities:
$ref: rules.datatypes.dwi.dwi.entities
$ref: rules.datatypes.raw.dwi.dwi.entities
space: optional
resolution: optional
density: optional
label: optional
description: optional

anat_parametic_discrete_surface:
$ref: rules.datatypes.anat.parametric
$ref: rules.datatypes.raw.anat.parametric
suffixes:
- dseg
extensions:
- .label.gii
- .dlabel.nii
entities:
$ref: rules.datatypes.anat.parametric.entities
$ref: rules.datatypes.raw.anat.parametric.entities
hemisphere: optional
space: optional
resolution: optional
density: optional
description: optional

anat_nonparametic_discrete_surface:
$ref: rules.datatypes.anat.nonparametric
$ref: rules.datatypes.raw.anat.nonparametric
suffixes:
- dseg
extensions:
- .label.gii
- .dlabel.nii
entities:
$ref: rules.datatypes.anat.nonparametric.entities
$ref: rules.datatypes.raw.anat.nonparametric.entities
hemisphere: optional
space: optional
resolution: optional
Expand Down
0 src/schema/rules/datatypes/anat.yaml → src/schema/rules/datatypes/raw/anat.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/datatypes/beh.yaml → src/schema/rules/datatypes/raw/beh.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/datatypes/dwi.yaml → src/schema/rules/datatypes/raw/dwi.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/datatypes/eeg.yaml → src/schema/rules/datatypes/raw/eeg.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/datatypes/fmap.yaml → src/schema/rules/datatypes/raw/fmap.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/datatypes/func.yaml → src/schema/rules/datatypes/raw/func.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/datatypes/ieeg.yaml → src/schema/rules/datatypes/raw/ieeg.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/datatypes/meg.yaml → src/schema/rules/datatypes/raw/meg.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/datatypes/micr.yaml → src/schema/rules/datatypes/raw/micr.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/datatypes/perf.yaml → src/schema/rules/datatypes/raw/perf.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/datatypes/pet.yaml → src/schema/rules/datatypes/raw/pet.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/anat.yaml → src/schema/rules/sidecars/raw/anat.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/asl.yaml → src/schema/rules/sidecars/raw/asl.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/beh.yaml → src/schema/rules/sidecars/raw/beh.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/continuous.yaml → ...schema/rules/sidecars/raw/continuous.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/dwi.yaml → src/schema/rules/sidecars/raw/dwi.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/eeg.yaml → src/schema/rules/sidecars/raw/eeg.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/entity_rules.yaml → ...hema/rules/sidecars/raw/entity_rules.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/events.yaml → src/schema/rules/sidecars/raw/events.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/fmap.yaml → src/schema/rules/sidecars/raw/fmap.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/func.yaml → src/schema/rules/sidecars/raw/func.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/ieeg.yaml → src/schema/rules/sidecars/raw/ieeg.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/meg.yaml → src/schema/rules/sidecars/raw/meg.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/micr.yaml → src/schema/rules/sidecars/raw/micr.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/mri.yaml → src/schema/rules/sidecars/raw/mri.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/sidecars/pet.yaml → src/schema/rules/sidecars/raw/pet.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/tabular_data/eeg.yaml → src/schema/rules/tabular_data/raw/eeg.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/tabular_data/ieeg.yaml → src/schema/rules/tabular_data/raw/ieeg.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/tabular_data/meg.yaml → src/schema/rules/tabular_data/raw/meg.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/tabular_data/perf.yaml → src/schema/rules/tabular_data/raw/perf.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/tabular_data/pet.yaml → src/schema/rules/tabular_data/raw/pet.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/tabular_data/physio.yaml → ...schema/rules/tabular_data/raw/physio.yaml
View file
Open in desktop
File renamed without changes.
0 src/schema/rules/tabular_data/task.yaml → src/schema/rules/tabular_data/raw/task.yaml
View file
Open in desktop
File renamed without changes.